Others of 光学解析室 NIBB Spectrography and Bioimaging Facility

Publications：Other Collaborative Research (medaka etc.)

Request for Acknowledgement:

All works published that include results obtained using the SBI equipment must be acknowledged and a copy of the publication should be sent as paper or pdf to the facility.

Examples for acknowledgement:

・We thank Spectrography and Bioimaging facility, NIBB Core Research Facilities for technical support.

If you were supported by the NIBB collaborative research:

・This study was supported by NIBB Individual Collaborative Research Program (NN-NNN*) to AA**.

*: the project number of the NIBB collaborative research project.
**: the initial of the representative of the NIBB collaborative research project.

List of Collaborative Research (Others) Publications

Original Papers (2011-2020)
(43) Watanabe, Y.,Okuya, K., Takada, Y., Kinoshita, M., Yokoi, S., Chisada, S., Kamei, Y., Tatsukawa, H., Yamamoto, N., Abe, H., Hashimoto, H. and Hitomi, K. (2020). Gene disruption of medaka (Oryzias latipes) orthologue for mammalian tissue-type transglutaminase (TG2) causes movement retardation. J Biochem. in press.
(42) Zeng, C. W., Sheu, J. C. and Tsai, H. J. (2020). The Neuronal Regeneration of Adult Zebrafish After Spinal Cord Injury Is Enhanced by Transplanting Optimized Number of Neural Progenitor Cells. Cell Transplant. 29, 1-11.
(41) Yokoi, S., Naruse, K., Kamei, Y., Ansai, S., Kinoshita, M., Mito, M., Iwasaki, S., Inoue, S., Okuyama, T., Nakagawa, S., Young, L. J. and Takeuchi, H. (2020). Sexually dimorphic role of oxytocin in medaka mate choice. PNAS 117, 4802-4808. プレスリリース（基礎生物学研究所）（北海道大学）（東北大学）（岡山大学）
(40) Fujikawa, Y., Ishikawa-Fujiwara, T., Kuo, T., Shinkai, N., Shoji, T., Kawasaki, T., Kamei, Y., Sakuraba, Y., Sato, A., Kinoshita, M., Gondo, Y., Yuba, S., Tsujimura, T., Sese, J. and Todo, T. (2020). Involvement of Rev1 in alkylating agent-induced loss of heterozygosity in Oryzias latipes. Genes Cells. 25, 124-138.
(39) Uchimura, T., Hara, S., Yazawa, T., Kamei, Y. and Kitano, T. (2019). Involvement of heat shock proteins on the transcriptional regulation of corticotropin-releasing hormone in Medaka. Frontiers in Endocrinology 10, 529
(38) Shikata, T., Takahashi, F., Nishide, H., Shigenobu, S., Kamei, Y., Sakamotomo, S., Yuasa, K.., Nishiyama, Y., Yamasaki, Y. and Uchiyama, I. (2019). RNA-seq analysis reveals genes related to photoreception, nutrient uptake, and toxicity in a noxious red-tide raphidophyte Chattonella antiqua. Frontiers in Microbiology 10, 1764 プレスリリース（基礎生物学研究所）（水産研究・教育機構）
(37) Furukawa, F., Hamasaki, S., Hara, S., Uchimura, T., Shiraishi, E., Osafune, N., Takagi, H., Yazawa, T., Kamei, Y. and Kitano, T. (2019). Heat shock factor 1 protects germ cell proliferation during early ovarian differentiation in medaka. Sci. Rep. 9, 6927 プレスリリース（熊本大学）
(36) Nakayama, T., Shimmura, T., Shinomiya, A., Okimura, K., Takehana, Y., Furukawa, Y., Shimo, T., Senga, T., Nakatsukasa, M., Nishimura, T., Tanaka, M., Okubo, K., Kamei, Y., Naruse, K. and Yoshimura, T. (2019). Seasonal regulation of the lncRNA LDAIR modulates self-protective behaviours during the breeding season. Nature Ecology & Evolution 3, 845-852 プレスリリース（基礎生物学研究所）
(35) Abe, E., Yasugi, M., Takeuchi, H., Watanabe, E., Kamei, Y. and Yamamoto, H. (2019) . Development of omnidirectional aerial display with aerial imaging by retro-reflection (AIRR) for behavioral biology experiments Optical Review　26, 221–229
(34) Tonoyama, Y., Shinya, M., Toyoda, A., Kitano, T., Oga, A., Nishimaki, T., Katsumura, T., Oota, H., Wan, M. T., Yip, B. W. P., Helen, M. O. L., Chisada, S., Deguchi, T., Au, D. W. T., Naruse, K., Kamei, Y. and Taniguchi, Y. (2018). Abnormal nuclear morphology is independent of longevity in a zmpste24-deficient fish model of Hutchinson-Gilford progeria syndrome (HGPS). Comp Biochem Physiol C Toxicol Pharmacol. 209, 54-62
(33) Watanabe, Y., Furukawa, E., Tatsukawa, H., Hashimoto, H., Kamei, Y., Taniguchi, Y. and Hitomi, K. (2018). Higher susceptibility to osmolality of the medaka (Oryzias latipes) mutants in orthologue genes of mammalian skin transglutaminases. Biosci Biotechnol Biochem. 82, 1165-1168
(32) Nagao,Y., Takada, H., Miyadai, M., Adachi, T., Seki, R., Kamei, Y., Hara, I., Taniguchi, Y.,Naruse, K., Hibi, M., Kelsh, R. N. and Hashimoto, H. (2018). Distinct interactions of Sox5 and Sox10 in fate specification of pigment cells in medaka and zebrafish. PLoS Genetics 14, e1007260
(31) Kamijo, M., Kawamura, M. and Fukamachi, S. (2018). Loss of red opsin genes relaxes sexual isolation between skin-colour variants of medaka. Behav. Processes 12, 150:25-28
(30) Horimizu, R., Ogawa, R., Watanabe, Y., Tatsukawa, H., Kinoshita, M., Hashimoto, H. and Hitomi, K.(2017). Biochemical characterization of a medaka (Oryzias latipes) orthologue for mammalian Factor XIII and establishment of a gene-edited mutant. FEBS J. 284, 2843-2855
(29) Ishikawa, T., Kashima, M., Nagano, A.J., Ishikawa-Fujiwara, T., Kamei, Y5, Todo T. and Mori, K.(2017). Unfolded protein response transducer IRE1-mediated signaling independent of XBP1 mRNA splicing is not required for growth and development of medaka fish. eLife　e26845
(28) Shimmura, T., Nakayama, T., Shinomiya, A., Fukamachi, S., Yasugi, M., Watanabe, E., Shimo,T.,Senga, T., Nishimura, T., Tanaka, M., Kamei, Y., Naruse, K. & Yoshimura, T. (2017). Dynamic plasticity in phototransduction regulates seasonal changes in color perception. Nature Commun. 8, 412 プレスリリース（基礎生物学研究所）
(27) Nakamoto, M., Shibata, Y., Ohno, K3. Usami, T., Kamei, Y., Taniguchi, Y., Todo, T., Sakamoto, T., Young, G., Swanson, P., Naruse, K. and Nagahama, Y. (2017). Ovarian aromatase loss-of-function mutant medaka undergo ovary degeneration and partial female-to-male sex reversal after puberty. Mol Cell Endocrinol. 460, 104-122
(26) Takeuchi, M., Inoue, C., Goshima, A., Nagao, Y., Shimizu, K., Miyamoto, H., Shimizu, T., Hashimoto, H., Yonemura, S., Kawahara, A., Hirata, Y., Yoshida, M. and Hibi, M. (2017). Medaka and zebrafish contactin1 mutants as a model for understanding neural circuits for motor coordination. Genes Cells. 22, 723-741
(25) Ishikawa, T., Toyama, T., Nakamura, Y., Tamada, K., Shimizu, H., Ninagawa, S., Okada, T., Kamei, Y., Ishikawa-Fujiwara, T., Todo, T., Aoyama, E., Takigawa, M., Harada, A. and Mori, K. (2017). UPR transducer BBF2H7 allows export of type II collagen in a cargo- and developmental stage-specific manner. J Cell Biol. 216, 1761-1774 プレスリリース（京都大学）
(24) Nakayasu, T., Yasugi, M., Shiraishi, S., Uchida, S. and Watanabe, E. (2017). Three-dimensional computer graphic animations for studying social approach behaviour in medaka fish: Effects of systematic manipulation of morphological and motion cues. PLoS One 12, e0175059 プレスリリース（基礎生物学研究所）
(23) Takada, Y., Watanabe, Y., Okuya, K., Tatsukawa, H., Hashimoto, H. and Hitomi, K. (2017). Biochemical characterization of the medaka (Oryzias latipes) orthologue for mammalian tissue-type transglutaminase (TG2). Biosci. Biotechnol. Biochem. 81, 469-474.
(22) Yokoi, S., Ansai, S., Kinoshita, M., Naruse, K., Kamei, Y., Young, L. J., Okuyama, T. and Takeuchi, H. (2016). Mate-guarding behavior enhances male reproductive success via familiarization with mating partners in medaka fish. Frontiers in Zoology 13, 21-31. プレスリリース（基礎生物学研究所）
(21) Kikuta, A., Furukawa, E., Ogawa, R., Suganuma, N., Saitoh, M., Nishimaki, T., Katsumura, T., Oota, H., Kawamoto, T., Tatsukawa, H., Hashimoto, H. and Hitomi, K. (2015). Biochemical characterization of medaka (Oryzias latipes) transglutaminases, OlTGK1 and OlTGK2, as orthologues of human keratinocyte-type transglutaminase. PLoS One. 2015 Dec 29;10(12):e0144194.
(20) Yokoi, S., Okuyama, T., Kamei, Y., Naruse, K., Taniguchi, Y., Ansai, S., Kinoshita, M., Young, L. J., Takemori, N., Kubo, T. and Takeuchi, H. (2015). An essential role of the arginine vasotocin system in mate-guarding behaviors in triadic relationships of Medaka fish (Oryzias latipes). PLoS Genetics 11, e1005009. プレスリリース（東京大学）
(19) Murozumi, N., Nakashima, R., Hirai, T., Kamei, Y., Ishikawa-Fujiwara, T., Todo, T. and Kitano, T. (2014). Loss of follicle-stimulating hormone receptor function causes masculinization and suppression of ovarian development in genetically female medaka. Endocrinology en20132060.
(18) Kimura, T., Nagao, Y., Hashimoto, H., Yamamoto-Shiraishi, Y.I., Yamamoto, S., Yabe, T., Takada, S., Kinoshita, M., Kuroiwa, A. and Naruse, K.(2014). Leucophores are similar to xanthophores in their specification and differentiation processes in medaka. PNAS. 111, 20, 7343-7348. プレスリリース（基礎生物学研究所）
(17) Nagao, Y., Suzuki, T., Shimizu, A., Kimura, T., Seki, R., Adachi, T., Inoue, C., Omae, Y., Kamei, Y., Hara, I., Taniguchi, Y., Naruse, K., Wakamatsu, Y., Kelsh, R.N., Hibi, M. and Hashimoto, H.(2014). Sox5 functions as a fate switch in medaka pigment cell development. PLoS Genetics 10, 4, e1004246. プレスリリース（基礎生物学研究所）
(16) Yamamoto, K., Suzuki, T., Aihara, Y., Haga, K., Sakai, T. and Nagatani, A. (2014). The phototropic response is locally regulated within the topmost light-responsive region of the Arabidopsis thaliana seedling. Plant Cell Physiol. 55(3), 497–506.
(15) Ogino, Y., Hirakawa, I., Inohaya, K., Sumiya, E., Miyagawa, S., Denslow, N., Yamada, G., Tatarazako, N. and Iguchi, T. (2014). Bmp7 and Lef1 are the downstream effectors of androgen signaling in androgen-induced sex characteristics development in medaka. Endocrinology 155(2), 449-462. プレスリリース（基礎生物学研究所）
(14) Miura, K. and Furumoto, T. (2013). Cold signaling and cold response in plants. Int. J. Mol. Sci. 14, 5312-5337.
(13) Ochiai, T., Suehiro, Y., Nishinari, K., Kubo, T. and Takeuchi, H. (2013). A new data-mining method to search for behavioral properties that induce alignment and their involvement in social learning in medaka fish (Oryzias latipes). PLoS ONE 6, 8(9), e71685.
(12) Ansai, S., Sakuma, T., Yamamoto, T., Ariga, H., Uemura, N., Takahashi, R. and Kinoshita, M. (2013). Efficient targeted mutagenesis in medaka using custom-designed transcription activator-like effector nucleases. Genetics 193,739-749.
(11) Matsui, H., Sato, F., Sato, S., Koike, M., Taruno, Y., Saiki, S., Funayama, M., Ito, H., Taniguchi, Y., Uemura, N., Toyoda, A., Sakaki, Y., Takeda, S., Uchiyama, Y., Hattori, N. and Takahashi, R.(2013). ATP13A2 deficiency induces a decrease in cathepsin D activity, fingerprint-like inclusion body formation, and selective degeneration of dopaminergic neurons. FEBS Letters 587,1316-1325.
(10) Matsuzaki, Y., Hosokai, H., Mizuguchi, Y., Fukamachi, S., Shimizu, A. and Saya, H.(2013). Establishment of HRASG12V transgenic medaka as a stable tumor model for in vivo screening of anticancer drugs. PLoS ONE 8(1), e54424.
(9) Naoe, H., Chiyoda, T., Ishizawa, J., Masuda, K., Saya, H. and Kuninaka, S.(2013). The APC/C activator Cdh1 regulates the G2/M transition during differentiation of placental trophoblast stem cells. BBRC 430, 757-762.
(8) Oishi, T., Terai, S., Kuwashiro, S., Fujisawa, K., Matsumoto, T., Nishina, H. and Sakaida, I.(2012). Ezetimibe reduces fatty acid quantity in liver and decreased inflammatory cell infiltration and improved NASH in medaka model. BBRC 422, 22-27.
(7) Ishikawa, T., Okada, T., Ishikawa-Fujiwara, T., Todo, T., Kamei, Y., Shigenobu, S., Tanaka, M., Saito, T. L., Yoshimura, J., Morishita, S., Toyoda, A., Sakaki, Y., Taniguchi, Y., Takeda, S. and Mori, K. (2013). ATF6α/β-mediated adjustment of ER chaperone levels is essential for development of the notochord in medaka fish. Mol. Biol. Cell 24,1387-1395.
This paper was selected as a cover art.
(6) Ansai, S., Ochiai, H., Kanie, Y., Kamei, Y., Gou, Y., Kitano, T., Yamamoto, T. and Kinoshita, M. (2012). Targeted disruption of exogenous EGFP gene in medaka using zinc-finger nucleases. Develop. Growth Differ. 54. 546-556.
(5) Yasuda, T., Oda, S., Li, Z., Kimori, Y., Kamei, Y., Ishikawa, T., Todo, T. ank Mitani, H. (2012). Gamma-ray irradiation promotes premature meiosis of spontaneously differentiating testis-ova in the testis of p53-deficient medaka (Oryzias latipes). Cell Death Dis. 3, e395.
(4) Shimizu, A. and Shimizu, N. (2013). Dual promoter expression system with insulator ensures a stringent tissue-specific regulation of two reporter genes in the transgenic fish. Transgenic Res. 2013 Apr. 22(2), 435-444.
(3) Kitano, T., Hayashi, Y., Shiraishi, E. and Kamei, Y. (2012). Estrogen rescues masculinization of genetically female medaka by exposure to cortisol or high temperature. Mol Reprod Dev. 79,10,719-26.
This paper was selected as a cover art.
(2) Tokumoto, T. (2012). Identification of membrane progestin receptors (mPR) in goldfish oocytes as a key mediator of steroid non-genomic action. Steroids. 77(10):1013-6. Epub 2012 Apr 14.
(1) Chisada, S., Okamoto, H., Taniguchi, Y., Kimori, Y., Toyoda, A., Sakaki, Y., Takeda, S. and Yoshiura, Y. (2011). Myostatin-deficient medaka exhibit a double-muscling phenotype with hyperplasia and hypertrophy, which occur sequentially during post-hatch development. Dev Biol. 1;359(1):82-94. Epub 2011 Sep 7.
Others
(2) Shinya, M.(2016) Construction of the inbred strain Koich Kawakami et al. (eds.), Zebrafish: Methods and Protocols, Methods in Molecular Biology, vol. 1451.
(1) Tokumoto, T. (2013). Membrane progestin receptor, a key mediator of final oocyte maturation in fish. Sexual Plasticity and Gametogenesis in Fishes (B. Senthilkumaran ed) published by NOVA Science Publishers Inc., USA, 423-440.