Tanno A, Arakaki Y, Tokutsu R, Ueki N, Minagawa J, Yoshimura K, Hisabori T, Nozaki H, *Wakabayashi K (2021) The four-celled Volvocales green alga Tetrabaena socialis shows weak photobehavior and high photoprotection ability. PLoS One (in press). <久堀班との共同研究>
*Hippler M, *Minagawa J, *Takahashi Y (2021) Photosynthesis and chloroplast regulation—Balancing photosynthesis and photoprotection under changing environments. Plant Cell Physiol., pcab139.
Morishita J, Tokutsu R, Minagawa J, Hisabori T, *Wakabayashi K (2021) Characterization of Chlamydomonas reinhardtii mutants that exhibit strong positive phototaxis. Plants 10:1483 <久堀班との共同研究>
Toyoshima M, Sakata M, Ueno M, Toya Y, Matsuda F, Akimoto S, *Shimizu H (2021) Proteome analysis of response to different spectral light irradiation in Synechocystis sp. PCC 6803. Jour Proteomics. 246:104306. <清水班との共同研究>
Ogawa T, Suzuki K *Sonoike, K (2021) Respiration interacts with photosynthesis through the acceptor side of photosystem I, reflected in the dark-to-light induction kinetics of chlorophyll fluorescence in the cyanobacterium Synechocystis sp. PCC 6803. Front. Plant Sci. 12: 717968.
Ishikawa Y, Cassan C, Kadeer A, Yuasa K, Sato N, Sonoike K, Kaneko Y, Miyagi A, Takahashi H, Ishikawa T, Yamaguchi M, Nishiyama Y, Hihara Y, Gibon Y, *Kawai-Yamada M (2021) The NAD kinase Slr0400 functions as a growth repressor in Synechocystis sp. PCC 6803. Plant Cell Physiol. 62: 668-677 <川合班との共同研究>
Sakamoto T, Takatani N, Sonoike K, Jimbo H, Nishiyama Y, *Omata T (2021) Dissection of the mechanisms of growth inhibition resulting from loss of the PII protein in the cyanobacterium Synechococcus elongatus PCC 7942. Plant Cell Physiol. 62: 721-731. <小俣班との共同研究>
Ogawa T, *Sonoike K (2021) Screening of mutants using chlorophyll fluorescence. J. Plant Res. 134, 653-664.
Hasegawa H, Tsurumaki T, Imanura S, Sonoike K, *Tanaka K (2021) The circadian rhythm regulator RpaA modulates photosynthetic electron transport and alters the preferable temperature range for growth in a cyanobacterium. FEBS Lett. 595: 1480-1492. <田中班との共同研究>
*Nagao R, Yokono M, Ueno Y, Kato K, Tsuboshita N, Shen JR, *Akimoto S (2021) Basic pH-induced modification of excitation-energy dynamics in fucoxanthin chlorophyll a/c-binding proteins isolated from a pinguiophyte, Glossomastix chrysoplasta. Biochim. Biophys. Acta 1862: 148306.【プレスリリース】<長尾班との共同研究>
*Nagao R, Yokono M, Ueno Y, Suzuki T, Kato K, Kato K, Tsuboshita N, Jiang TY, Dohmae N, Shen JR, Ehira S, *Akimoto S (2021) Molecular organizations and function of iron-stress-induced-A protein family in Anabaena sp. PCC 7120. Biochim. Biophys. Acta 1862: 148327.【プレスリリース】<長尾班との共同研究>
*Nagao R, Yokono M, Ueno Y, Suzuki T, Kumazawa M, Kato K, Tsuboshita N, Dohmae N, Ifuku K, Shen JR, *Akimoto S (2021) Enhancement of excitation-energy quenching in fucoxanthin chlorophyll a/c-binding proteins isolated from a diatom, Phaeodactylum tricornutum. Biochim. Biophys. Acta 1862: 148350.【プレスリリース】<長尾班との共同研究>
Toyoshima M, Yamamoto C, Ueno Y, Toya Y, Akimoto S, *Shimizu H (2021) Role of type I NADH dehydrogenase in Synechocystis sp. PCC 6803 under phycobilisome excited red light. Plant Sci. 304: 110798. <清水班との共同研究>
Yoshikawa K, Ogawa K, Toya Y, Akimoto S, Matsuda F, *Shimizu H (2021) Mutations in hik26 and slr1916 lead to high-light stress tolerance in Synechocystis sp. PCC6803. Commun. Biol. 4: 343. 【プレスリリース】<清水班との共同研究>
Yamamoto C, Toyoshima M, Ueno Y, Kitamura S, Akimoto S, Toya Y, *Shimizu H (2021) Estimation of linear and cyclic electron flows in photosynthesis based on 13C-metabolic flux analysis. J. Biosci. Bioeng. 131:277-282. <清水班との共同研究>
*Nagao R, Yokono M, Kato KH, Ueno Y, Shen JR, *Akimoto S (2021) High-light modification of excitation-energy-relaxation processes in the green flagellate Euglena gracilis. Photosynth. Res. 149:303-311. <長尾班との共同研究>
Pan X, Tokutsu R, Li A, Takizawa K, Song C, Murata K, Yamasaki T, *Liu Z, *Minagawa J, *Li M. (2021) Structural basis of LhcbM5-mediated state transitions in green algae. Nat. Plants 7: 1119-1131 【プレスリリース】<山崎班との共同研究>
Sheng X, *Liu Z, Kim E, *Minagawa J (2021) Plant and algal PSII-LHCII supercomplexes: structure, evolution and energy transfer. Plant Cell Physiol. pcab072.
Maeda T, Takahashi S, Yoshida T, Shimamura S, Takaki Y, Nagai Y, Toyoda A, Suzuki Y, Arimoto A, Ishii H, Satoh N, Nishiyama T, Hasebe M, Maruyama T, Minagawa J, Obokata J, *Shigenobu S (2021) Chloroplast acquisition without the gene transfer in kleptoplastic sea slugs, Plakobranchus ocellatus. eLife 10: e60176.
Zhang XJ, Fujita Y, Tokutsu R, Minagawa J, Shen Y, *Shibata Y (2021) Shape-memory behavior of thylakoid in Chlamydomonas as revealed by novel excitation spectral microscopy. Plant Cell Physiol. 62: 872-882.
*Tokutsu, R., Fujimura-Kamada, K., Yamasaki, T., Okajima, K., Minagawa J. (2021) UV-A radiation rapidly activates photoprotective mechanisms in Chlamydomonas reinhardtii. Plant Physiol. 185: 1894-1902. <山崎班との共同研究>
Takahashi, S., Ozawa, S., Sonoike, K., Sasaki, K. and *Nishihara, M. (2020) Morphological and cytological observations of corolla green spots reveal the presence of functional chloroplasts in Japanese gentian. PLoS ONE 15(8): e0237173. 【プレスリリース】
Tanno, Y., Kato, S. Takahashi, S., Tamaki, S., Takaichi, S., Kodama, Y., Sonoike, K. and *Shinomura, T. (2020) Light dependent accumulation of β-carotene enhances photo-acclimation of Euglena gracilis. Journal of Photochemistry and Photobiology B: Biology, 209, 111950.
Shukla MK, Watanabe A, Wilson S, Giovagnetti V, Moustafa EI, *Minagawa J, *Ruban AV (2020) A novel method produces native LHCII aggregates from the photosynthetic membrane revealing their role in NPQ. J. Biol. Chem. 295: 17816-17826.
Watanabe, A. Minagawa J. (2020) Structural characterization of the photosystems in the green alga Chlorella sorokiniana. Planta 252: 79.
Kim, E., Kawakami, K., Sato, R., Ishii, A., *Minagawa J. (2020) Photoprotective capabilities of light-harvesting complex II trimers in a green alga Chlamydomonas reinhardtii. J. Phys. Chem. Lett. 11: 7755-7761.
*Kishimoto, M., Baird, A. H.l, Maruyama, S., Minagawa J., *Takahashi, S. (2020) Loss of symbiont infectivity following thermal stress limits recovery from bleaching in cnidarians. ISME J. 14: 3149-3152. 【プレスリリース】<丸山班との共同研究>
Kim, E., Watanabe, A., Duffy, C. D. P., Ruban, A. V., *Minagawa J. (2020) Multimeric and monomeric photosystem II supercomplexes represent structural adaptations to low- and high-light conditions. J. Biol. Chem. 295: 14537-14545.
Kato, H., Tokutsu, R., Kubota-Kawai, H., Burton-Smith, R. N., Kim, E., *Minagawa J. (2020) Characterization of a giant photosystem I supercomplex in the symbiotic dinoflagellate Symbiodiniaceae. Plant Physiol., 183: 1725-1734. <久保田班との共同研究>
*Faktorová D, Nisbet RER, Robledo JAF, Casacuberta E, Sudek L, Allen AE, Ares Jr M, Aresté C, Balestreri C, Barbrook AC, Beardslee P, Bender S, Booth DS, Bouget FY, Bowler C, Breglia AA, Broellochs A, Brownlee C, Burger G, Cerutti H, Cesaroni R, Chiurillo MA, Clemente T, Coles DB, Collier JL, Cooney L, Coyne K, Docampo R, Dupont CL, Edgcomb V, Einarsson E, Elustondo PA, Federici F, Freire-Beneitez V, Freyria NJ, Fukuda K, García PA, Girguis PR, Gomaa F, Gornik S, Guo J, Hampl V, Hanawa Y, Haro-Contreras ER, Hehenberger E, Highfield A, Hirakawa Y, Hopes A, Howe CJ, Hu I, Ibañez J, Irwin NAT, Ishii Y, Janowicz NE, Jones AC, Kachale A, Fujimura-Kamada K, Kaur B, Kaye JZ, Kazana E, Keeling PJ, King N, Klobutcher LA, Lander N, Lassadi I, Li Z, Lin S, Lozano JC, Luan F, Maruyama S, Matute T, Miceli C, Minagawa J., Moosburner M, Najle SR, Nanjappa DN, Nimmo IC, Noble L, Vanclová AMGN, Nowacki M, Nuñez I, Pain A, Piersanti A, Pucciarelli S, Pyrih J, Rest JS, Rius M, Robertson D, Ruaud A, Ruiz-Trillo I, Sigg MA, Silver PA, Slamovits CH, Swart E, Smith GJ, Sprecher B, Stern R, von der Haar T, Tsypin L, Turkewitz A, Turnšek J, Valach M, Vergé V, von Dassow P, Tsaousis A, Waller RF, Wang L, Wen X, Wheeler G, Woods A, Zhang H, *Mock T, *Worden AZ, *Lukeš J (2020) Genetic tool development in marine protists: Emerging model organisms for experimental cell biology. Nat. Methods 17: 481-494.
Negi S, Perrine Z, Friedland N, Kumar A, Tokutsu R, Minagawa J., Berg H, Barry AN, Govindjee G, *Sayre R (2020) Light-regulation of light harvesting antenna size substantially enhances photosynthetic efficiency and biomass yield in green algae. Plant J. 103: 584-603.
*Akimoto S, Ueno Y, Yokono M, Shen JR, *Nagao R (2020) Adaptation of light-harvesting and energy-transfer processes of a diatom Chaetoceros gracilis to different light qualities. Photosynth. Res. 146:87-93. <長尾班との共同研究>
Tanabe M, Ueno Y, Yokono M, Shen JR, *Nagao R, *Akimoto S. (2020) Changes in excitation relaxation of diatoms in response to fluctuating light, probed by fluorescence spectroscopies. Photosynth. Res. 146: 143-150. <長尾班との共同研究>
Nagao R, Ueno Y, Akimoto S, Shen JR (2020) Effects of CO2 and temperature on photosynthetic performance in the diatom Chaetoceros gracilis. Photosynth. Res. 146: 189-195. <長尾班との共同研究>
Oka K, Ueno Y, Yokono M, Shen JR, *Nagao R, *Akimoto S (2020) Adaptation of light-harvesting and energy-transfer processes of a diatom Phaeodactylum tricornutum to different light qualities. Photosynth. Res. 146: 227-234. <長尾班との共同研究>
*Nagao R, Yokono M, Ueno Y, Shen JR, *Akimoto S (2020) Excitation energy transfer and quenching in diatom PSI-FCPI upon P700 cation formation. J. Phys. Chem. B 124: 1481-1486. <長尾班との共同研究>
*Nagao R, Yokono M, Ueno Y, Jiang TY, Shen JR, *Akimoto S (2020) pH-induced regulation of excitation energy transfer in cyanobacterial photosystem I tetramer. J. Phys. Chem. B 124: 1949-1954. <長尾班との共同研究>
Ueno Y, Shimakawa G, Aikawa S, Miyake C, *Akimoto S (2020) Photoprotection mechanisms under different CO2 regimes during photosynthesis in a green alga Chlorella variabilis. Photosynth. Res. 144: 397-407.
*Akita F, Nagao R, Kato K, Nakajima Y, Yokono M, Ueno Y, Suzuki T, Dohmae N, *Shen JR, *Akimoto S, *Miyazaki N (2020) Structure of a cyanobacterial photosystem I surrounded by octadecameric IsiA antenna proteins. Commun. Biol. 3: 232. <長尾班との共同研究>
Nagao R, Kato K, Ifuku K, Suzuki T, Kumazawa M, Uchiyama I, Kashino Y, Dohmae N, Akimoto S, Shen JR, *Miyazaki N, *Akita F (2020) Structural basis for assembly and function of a diatom photosystem I-light-harvesting supercomplex. Nat. Commun. 11: 2481. 【プレスリリース】<長尾班との共同研究>
*Nagao R, Yokono M, Ueno Y, Shen JR, *Akimoto S (2020) Acidic pH-induced modification of excitation energy transfer in diatom fucoxanthin chlorophyll a/c-binding proteins. J. Phys. Chem. B 124: 4919-4923. <長尾班との共同研究>
Sheng, X., Watanabe, A., Li, A., Kim, E., Song, C., Murata, K., Song, D., *Minagawa J,, *Liu, Z. (2019) Structural insight into light harvesting for photosystem II in green algae. Nat. Plants 5: 1320-1330. 【プレスリリース】
Burton-Smith, R. N., Watanabe, A., Tokutsu, R., Song, C., Murata, K., *Minagawa J. (2019) Structural determination of the large photosystem II-light-harvesting complex II supercomplex of Chlamydomonas reinhardtii using non-ionic amphipol. J. Biol. Chem. 294: 15003-15013.
*Tokutsu, R., Fujimura-Kamada, K., Matsuo, T., Yamasaki, T., *Minagawa J. (2019) The CONSTANS flowering complex controls the protective response of photosynthesis in the green alga Chlamydomonas. Nat. Commun. 10: 4099. 【プレスリリース】 <山崎班との共同研究>
Ishii Y, *Maruyama S, Takahashi H, Aihara Y, Yamaguchi T, Yamaguchi K, Shigenobu S, *Kawata M, Ueno N, Minagawa J (2019) Global shifts in gene expression profiles accompanied with environmental changes in cnidarian-dinoflagellate endosymbiosis. G3 9: 2337-2347. <丸山班との共同研究>
*Kim, E., Watanabe, A., Sato, R., Okajima, K., *Minagawa J. (2019) pH-responsive binding properties of light-harvesting complexes in a photosystem II supercomplex investigated by thermodynamic dissociation kinetics analysis. J. Phys. Chem. Lett. 10: 3615-3620.
*Nagao, R., Ueno, Y., Yokono, M., Shen, J-R., *Akimoto, S. (2019) Effects of excess light energy on excitation-energy dynamics in a pennate diatom Phaeodactylum tricornutum. Photosynth. Res.141: 355-365. <長尾班との共同研究>
Ueno Y, *Nagao R, Shen JR. *Akimoto, S (2019) Spectral properties and excitation relaxation of novel fucoxanthin chlorophyll a/c-binding protein complexes. J. Phys. Chem. Lett. 10: 5148-5152. <長尾班との共同研究>
Watanabe, A., Kim, E., Burton-Smith, R-N., Tokutsu, R., *Minagawa J (2019) Amphipol-assisted purification method for the highly active and stable photosystem II supercomplex of Chlamydomonas reinhardtii. FEBS lett. 593: 1072-1079.
*Tokutsu, R., Fujimura-Kamada, K., Matsuo, T., Yamasaki, T., *Minagawa J (2019) Isolation of photoprotective signal transduction mutants by systematic bioluminescence screening in Chlamydomonas reinhardtii. Sci. Rep. 9: 2820. <山﨑班との共同研究>
Kubota-Kawai, H., Burton-Smith, R.N., Tokutsu, R., Song, C., Akimoto, S., Yokono, M., Ueno, Y., Kim, E., Watanabe, A., Murata, K., *Minagawa J (2019) Ten antenna proteins are associated with the core in the supramolecular organization of the photosystem I supercomplex in Chlamydomonas reinhardtii. J. Biol. Chem. 294: 4304-4314. <河合班との共同研究>
Toyoshima, M., Sakata, M., Ohnishi, K., Tokumaru, Y., Kato, Y., Tokutsu, R., Sakamoto, W., Minagawa J. , Matsuda, F., *Shimizu, H. (2019) Targeted proteome analysis of microalgae under high-light conditions by optimized protein extraction of photosynthetic organisms. J. Biosci. Bioeng. 127: 394-402. <清水班との共同研究>
Aihara, Y., Maruyama, S., Baird, A.H., Iguchi, A., *Takahashi, S., *Minagawa J (2019) Green fluorescence from cnidarian hosts attracts symbiotic algae. Proc. Natl. Acad. Sci. U. S. A. 116: 2118-2123.【プレスリリース】 <丸山班との共同研究>
Aihara, Y., Fujimura-Kamada, K., Yamasaki, T., *Minagawa J (2019) Algal photoprotection is regulated by the E3 ligase CUL4-DDB1DET1. Nat. Plants 5: 34-40. 【プレスリリース】 <山崎班との共同研究>
*Nagao R, Yokono M, Ueno Y, Shen, JR, *Akimoto, S (2019) pH-Sensing machinery of excitation energy transfer in diatom PSI–FCPI complexes. J. Phys. Chem. Lett. 10: 3531-3535. <長尾班との共同研究>
Nagao R, Kato K, Suzuki T, Ifuku K, Uchiyama I, Kashino Y, Dohmae N, Akimoto, S, *Shen JR, *Miyazaki N, *Akita F (2019) Structure basis for energy harvesting and dissipation in a diatom PSII–FCPII supercomplexes. Nat. Plants. 5: 890-901.【プレスリリース】 <長尾班との共同研究>
Kato K, Nagao R, Jiang TY, Ueno Y, Yokono M, Chan SK, Watanabe M, Ikeuchi M, *Shen JR, *Akimoto, S, *Miyazaki N, *Akita F (2019) Structure of a cyanobacterial photosystem I tetramer revealed by cryo-electron microscopy. Nat. Commun. 10: 4929.【プレスリリース】 <長尾班との共同研究>
*Nagao, R., Yokono, M., Ueno, Y., Shen, J-R.,*Akimoto, S (2019) Low-energy chlorophylls in fucoxanthin chlorophyll a/c-binding protein conduct excitation energy transfer to photosystem I in diatoms. J. Phys. Chem. B 123: 66-70. <長尾班との共同研究>
Ueno, Y., Aikawa, S., Kondo, A., *Akimoto, S (2019) Adaptation of light-harvesting functions of unicellular green algae to different light qualities. Photosynth. Res. 139:145-154.
*Yokono, M., Umetani, I., Takabayashi, A., Akimoto, S., Tanaka, A. (2019) Regulation of excitation energy in Nannochloropsis photosystem II. Photosynth. Res. 139: 155-161.
*Nagao, R., Kagatani, K., Ueno, Y., Shen, J-R., *Akimoto, S (2019) Ultrafast excitation-energy dynamics in diatom photosystem I?antenna complex: a femtosecond fluorescence upconversion study. J. Phys. Chem. B 123: 2673-2678. <長尾班との共同研究>
*Nagao, R., Ueno, Y., Akita, F., Suzuki, T., Dohmae, N., Akimoto, S., *Shen, J-R. (2019) Biochemical characterization of photosystem I complexes having different subunit compositions of fucoxanthin chlorophyll a/c-binding proteins in the diatom Chaetoceros gracilis. Photosynth. Res. 140: 141-149. <長尾班との共同研究>
*Yokono, M., Takabayashi, A., Kishimoto, J., Fujita, T., Iwai, M., Murakami, A., Akimoto, S., Tanaka, A. (2019) The PSI-PSII megacomplex in green plants. Plant Cell Physiol. 60: 1098-1108.
Furukawa R, Aso M, Fujita T, Akimoto, S, Tanaka R, Tanaka A, *Yokono M, *Takabayashi A (2019) Formation of a PSI–PSII megacomplex containing LHCSR in the moss Physcomitrella patens, J. Plant Res. 132: 867-880. <高橋班・田中研との共同研究>
Kamrani YY, Matsuo T, Mittag M, *Minagawa J (2018) ROC75 Functions as an attenuator of the circadian clock to control photoprotective LHCSR3 gene in Chlamydomonas reinhardtii. Plant Cell Physiol. 59: 2602-2607.
Kosuge, K., Tokutsu, R., Kim, E., Akimoto, S., Yokono, M., Ueno, Y., *Minagawa J(2018) LHCSR1-dependent fluorescence quenching is mediated by excitation energy transfer from LHCII to photosystem I in Chlamydomonas reinhardtii. Proc. Natl. Acad. Sci. U. S. A. 115: 3722-3727. 【プレスリリース】
Ogawa T, *Sonoike K (2018) Evaluation of the Condition of Respiration and Photosynthesis by Measuring Chlorophyll Fluorescence in Cyanobacteria. Bio-protocol 8: e2834.
Kim, E., Tokutsu, R., *Minagawa J (2018) Investigation on the thermodynamic dissociation kinetics of photosystem II supercomplexes to determine the binding strengths of light-harvesting complex. J. Phys. Chem. B 122: 1627-1630.
Ueno, Y., Shimakawa, G., Miyake, C., *Akimoto, S (2018) Light-harvesting strategy during CO2-dependent photosynthesis in the green alga Chlamydomonas reinhardtii. J. Phys. Chem. Lett. 9: 1028-1033.
Yokono M, *Akimoto, S (2018) Energy transfer and distribution in photosystem super/megacomplex of plants. Curr. Opin. Biotechnol. 54: 50-56.
*Nagao, R., Ueno, Y., Yokono, M., Shen, J-R., *Akimoto, S (2018) Alternation of pigment composition and their interactions in response to different light conditions in the diatom Chaetoceros gracilis by time-resolved fluorescence spectroscopy. Biochim. Biophys. Acta 1859, 524-530. <長尾班との共同研究>
Kim E, Akimoto, S, Tokutsu R, Yokono M, *Minagawa J (2017) Fluorescence lifetime analyses reveal how the high light-responsive protein LHCSR3 transforms PSII light-harvesting complexes into an energy-dissipative state. J. Biol. Chem. 292: 18951-18960.
Takizawa K, Minagawa J, Tamura M, Kusakabe N, *Narita N (2017) Red-edge position of habitable exoplanets around M-dwarfs. Sci. Rep. 7: 7561.
Misumi M, *Sonoike K (2017) Characterization of the influence of chlororespiration on the regulation of photosynthesis in the glaucophyte Cyanophora paradoxa. Sci. Rep. 7: 46100.
Ogawa T, Misumi M, *Sonoike K (2017) Estimation of photosynthesis in cyanobacteria by pulse amplitude modulation chlorophyll fluorescence: problems and solutions. Photosynth. Res. 133: 63-73.
Onishi A, Aikawa S, Kondo A, *Akimoto S (2017) Energy transfer in Anabaena variabilis filaments adapted to nitrogen-depleted and nitrogen-enriched conditions studied by time-resolved fluorescence. Photosynth. Res. 133: 317-326.
Hamada F, Murakami A, *Akimoto S
(2017) Adaptation of divinyl chlorophyll a/b-containing cyanobacterium to different light conditions: Three strains of Prochlorococcus marinus. J. Phys. Chem. B 121: 9081-9090.
Kato Y, Yokono M, *Akimoto S, Takabayashi A, Tanaka A, *Tanaka R (2017) Deficiency of the Stroma-lamellar Protein LIL8/PSB33 Affects Energy Transfer around Photosystem I in Arabidopsis. Plant Cell Physiol. 58: 2026-2039.
*Petroutsos D., Tokutsu R., Maruyama S, Flori S, Greiner A, Magneschi L, Cusant L, Kottke T, Mittag M, Hegemann P, *Finazzi G, *Minagawa J (2016) A blue light photoreceptor mediates the feedback regulation of photosynthesis. Nature 537: 563-566. 【プレスリリース】 <丸山班との共同研究>
Yokono M, Ueno Y, *Akimoto S (2021) Modification of energy distribution between photosystems I and II by spillover revealed by time-resolved fluorescence spectroscopy. In Shen JR, Satoh K, Allakhverdiev SI (eds.), "Photosynthesis: molecular approaches to solar energy conversion", Springer, Chapter 10, pp. 277-302.
計画研究:A01-2(高橋班)
Rathod, MK, Nellaipalli S, Ozawa S, Kuroda H, Kodama N, Bujaldon S, Wollman F-A, and *Takahashi Y. (2021) Assembly apparatus of light-harvesting complexes; Identification of Alb3.1-cpSRP-LHCP complex in the green alga Chlamydomonas reinhardtii. Plant and Cell Physiol. in press.
Gupta, T.K., Klumpe, S., Gries, K., Heinz, S., Wietrzynski, W., Ohnishi, N., Niemeyer, J., Schaffer, M., Rast, A., Strauss, M., Plitzko, J.M., Baumeister, W., Rudack, T., Sakamoto, W., Nickelsen, J., Schuller, J.M., Schroda, M., and Engel, B.D. (2021) Structural basis for VIPP1 oligomerization and maintenance of thylakoid membrane integrity. Cell 184: 3643-3659. 【プレスリリース】
Dey D, Dhar D, Fortunato H, Obata D, Tanaka A, Tanaka R, Basu S, *Ito H (2021) Insights into the structure and function of the rate-limiting enzyme of chlorophyll degradation through analysis of a bacterial Mg-dechelatase homolog. Comput Struct Biotech J. 19: 5333–5347.
Fukura K, Tanaka A, Tanaka R, *Ito H (2021) Enrichment of chlorophyll catabolic enzymes in grana margins and their cooperation in catabolic reactions. Plant Physiol. 266: 153535.
Suehiro H, Tanaka R, *Ito H (2021) Distribution and functional analysis of the two types of 8-vinyl reductase involved in chlorophyll biosynthesis in marine cyanobacteria. Arch Microbiol. 203: 3565–3575.
Chen Y, Yamori W, Tanaka A, Tanaka R, *Ito H (2021) Degradation of the photosystem II core complex is independent of chlorophyll degradation mediated by Stay-Green Mg2+ dechelatase in Arabidopsis. Plant Sci. 307: 110902. <久堀班・矢守研との共同研究>
Aso M, Matsumae R, Tanaka A, Tanaka R, *Takabayashi A (2021) Unique peripheral antennas in the photosystems of the streptophyte alga Mesostigma viride. Plant Cell Physiol. in press.
Kameo S, Aso M, Furukawa R, Matsumae R, Yokono M, Fujita T, Tanaka A, Tanaka R, *Takabayashi A (2021) Substitution of deoxycholate with the amphiphilic polymer amphipol A8-35 improves the stability of large protein complexes during native electrophoresis. Plant Cell Physiol. 62: 348-355.
Kuroda, H., Kawashima, K., Ueda, K., Ikeda, T., Saito, K., Ninomiya, R., Hida, C., Takahashi, Y., and Ishikita, H. (2021) Proton transfer pathway from the oxygen-evolving complex in photosystem II substantiated by extensive mutagenesis. Biochim. Biophys. Acta, 1862:148329. <栗栖班・斎藤研との共同研究>
Nishioka K, *Kato Y, Ozawa SI, Takahashi, Y, *Sakamoto W (2021) P1. hos1. -1. tag-based approach to1. 1. study protein phosphorylation 1. in1. the 1. thylakoid1. membrane. Photosynth. Res. 147:107-124.
Nellaepalli S, Kim RG, Grossman AR, *Takahashi, Y. (2021) Interplay of four auxiliary factors is required for the assembly of photosystem I reaction center subcomplex. Plant J. 106: 1075-1086.
Hamaguchi T, Kawakami K, Shinzawa-Itoh K, Inoue-Kashino N, Itoh S, Ifuku K, Yamashita E, Maeda K, Yonekura K, *Kashino Y (2021) Structure of the far-red light utilizing photosystem I of Acaryochloris marina. Nat. Commun. 12: 2333. 【プレスリリース】
Kajiya-Kanegae, H., Takanashi, H., Fujimoto, M., Ishimori, M., Ohnishi, N., Fiona, W.W., Omollo, E.A., Kobayashi, M., Yano, K., Nakano, M., Kozuka, T., Kusaba, M., Iwata, H., Tsutsumi, N., *Sakamoto W (2020) RAD-seq-Based High-Density Linkage Map Construction and QTL Mapping of Biomass-Related Traits in Sorghum Using a Japanese Landrace Takakibi NOG. Plant Cell Physiol. 61: 1262-1272.
Bujaldon, S., Kodama, N., Rathod, M.K., Tourasse, N., Ozawa, S-I., Selles, J., Vallon, O., *Takahashi, Y., *Wollman, FA (2020) The BF4 and p71 antenna mutants from Chlamydomonas reinhardtii. Biochim. Biophys. Acta 1861: 148085.
Ishikawa N, Yokoe Y, Nishimura T, Nakano T, *Ifuku K (2020) PsbQ-Like Protein 3 Functions as an Assembly Factor for the Chloroplast NADH Dehydrogenase-like Complex in Arabidopsis.. Plant Cell Physiol.61: 1252-1261
Che Y, Kusama S, Matsui S, Suorsa M, Nakano T, Aro EM, *Ifuku K (2020) Arabidopsis PsbP-Like Protein 1 Facilitates the Assembly of the Photosystem II Supercomplexes and Optimizes Plant Fitness under Fluctuating Light. Plant Cell Physiol. 61:1168-1180.
Kato, Y., *Sakamoto, W. (2019) Phosphorylation of the Chloroplastic Metalloprotease FtsH in Arabidopsis Characterized by Phos-Tag SDS-PAGE. Front. Plant Sci. 10: 1080
Hu X, Jia T, Hörtensteiner S, Tanaka A, *Tanaka R (2020) Subcellular localization of chlorophyllase2 reveals it is not involved in chlorophyll degradation during senescence in Arabidopsis thaliana. Plant Science 290: 110314.
Furukawa R, Aso M, Fujita T, Akimoto S, Tanaka R, Tanaka A, *Yokono M, *Takabayashi A (2019) Formation of a PSI-PSII megacomplex containing LHCSR and PsbS in the moss Physcomitrella patens. J. Plant Res. 132: 867-880.
Lim H, Tanaka A, Tanaka R, *Ito H (2019) In Vitro Enzymatic Activity Assays Implicate the Existence of the Chlorophyll Cycle in Chlorophyll b-Containing Cyanobacteria. Plant Cell Physiol 60: 2672-2683.
Obata D, Takabayashi A, Tanaka R, Tanaka A, *Ito H (2019) Horizontal Transfer of Promiscuous Activity from Nonphotosynthetic Bacteria Contributed to Evolution of Chlorophyll Degradation Pathway. Mol Biol Evol 36: 2830-2841. 【プレスリリース】
Ohnishi, N., Wacera, F., *Sakamoto, W. (2019) Photosynthetic Responses to High Temperature and Strong Light Suggest Potential Post-flowering Drought Tolerance of Sorghum Japanese Landrace Takakibi. Plant Cell Physiol., 60: 2086-2099.
Suga, M., Ozawa, S., Yoshida-Motomura, K., Akita, F., *Miyazaki, N., and *Takahashi, Y (2019) Structure of the green algal photosystem I supercomplex with a decameric light-harvesting complex I. Nature Plants 5: 626-636. 【プレスリリース】
*>Takagi, D., Ifuku, K., Nishimura, T., Miyake, C. (2019) Antimycin A inhibits cytochrome b559-mediated cyclic electron flow within photosystem II. Photosynth. Res. 139: 487-498.
Takami, T., Ohnishi, N., Kurita, Y., Iwamura, S., Ohnishi, M., Kusaba, M., Mimura, T., and *Sakamoto, W. (2018) Organelle DNA degradation contributes to the efficient use of phosphate in seed plants. Nature Plants, 4: 1044-1055.
Steinbeck, J., Ross, I., Rothnagel R., Gabelein P., Schulze, S., Giles, N., Ali, R., Drysdale, R., Sierecki, E., Gambin, Y., Stahlberg, H., Takahashi, Y., *Hippler M., *Hankamer, B. (2018) Structure of a PSI-LHCI-cyt b6f supercomplex in Chlamydomonas reinhardtii promoting cyclic electron flow under anaerobic conditions. Proc. Natl. Acad. Sci. USA 115: 10517-10522.
Ozawa, S., Bald, T., Onishi, T., Xue, H., Matsumura, T., Kubo, R., *Takahashi, Y., Hippler, H., and Takahashia, Y. (2018) Configuration of ten light-harvesting chlorophyll a/b complex I subunits in Chlamydomonas reinhardtii photosystem I. Plant Physiology, 178: 583-595.
Nellaepalli S, Ozawa S, Kuroda H, and * Takahashi Y. (2018) The photosystem I assembly apparatus consisting of Ycf3-Y3IP1 and Ycf4 modules. Nat. Comm. 9: 2439.
Kato, Y., Hyodo, K., and *Sakamoto, W. (2018) Photosystem II repair cycle requires proper FtsH turnover through EngA GTPase. Plant Physiol., 178: 596-611.
Kato, Y. *Sakamoto, W. (2018) FtsH protease in the thylakoid membrane: physiological functions and the regulation of protease activity. Frontiers Plant Sci., 9: 855.
Ohnishi N, Zhang L, *Sakamoto W (2018) VIPP1 involved in chloroplast membrane integrity has GTPase activity in vitro. Plant Physiol. 177: 328-338.
*Sakamoto W, Takami T (2018) Chloroplast DNA dynamics: copy number, quality control, and degradation. Plant Cell Physiol. 59: 1120-1127.
Asada M, Nishimura T, Ifuku K, *Mino H (2018) Location of the extrinsic subunit PsbP in photosystem II studied by pulsed electron-electron double resonance. Biochim. Biophys. Acta 1859: 345-399.
Nishimura, K., Kato, Y., and Sakamoto, W. (2017) Essentials of proteolytic machineries in chloroplasts. Mol. Plant, 10: 4-19.
Bujaldon S, Kodama N, Rappaport F, Subramanyam R, de Vitry C, *Takahashi Y, *Wollman FA (2017) The functional accumulation of antenna proteins in chlorophyll b-less mutants of Chlamydomonas. Mol. Plant 10: 115-130.
Kato Y, Yokono M, Akimoto S, Takabayashi A, Tanaka A, *Tanaka R (2017) Deficiency of the stroma-lamellar protein LIL8/PSB33 affects energy transfer around PSI in Arabidopsis. Plant Cell Physiol. 58: 2026-2039.
Hu X, Kato Y, Sumida A, Tanaka A, *Tanaka R (2017) The SUFBC2D complex is required for the biogenesis of all major classes of plastid Fe-S proteins. Plant J. 90: 235-248.
Hu X, Page MT, Sumida A, Tanaka A, Terry MJ, *Tanaka R (2017) The iron-sulfur cluster biosynthesis protein SUFB is required for chlorophyll synthesis, but not phytochrome signaling. Plant J. 89: 1184-1194.
Nishimura T, Sato F, *Ifuku K (2017) In vivo system for analyzing the function of the PsbP protein using Chlamydomonas reinhardtii. Photosynth. Res. 33: 117-127.
著書
*Ifuku K, Nagao R. (2021) Evolution and Function of the Extrinsic Subunits of Photosystem II. In Shen JR, Satoh K, Allakhverdiev S (eds), "Photosynthesis: Molecular Approaches to Solar Energy Conversion", Springer Nature Switzerland AG, pp. 429-446.
*Tanaka A, Tanaka R (2019) The biochemistry, physiology, and evolution of the chlorophyll cycle. In Grimm B (Ed.) "Advances in Botanical Research: Metabolism, Structure and Function of Plant Tetrapyrroles: Introduction, Microbial and Eukaryotic Chlorophyll Synthesis and Catabolism", Elsevier, 90: 183-212.
*Takahashi Y (2016) Recent Understanding on Photosystem I: In Solar to Chemical Energy Conversion; Theory and Application. eds. by M. Sugiyama, K. Fujii and S. Nakamura, Springer International Publishing. pp. 403-415.
計画研究:A01-3(鹿内班)
Zhou Q, Wang C, Yamamoto H, *Shikanai T (2021) PTOX-dependent safety valve does not oxidize P700 during photosynthetic induction in the Arabidopsis pgr5 mutant. Plant Physiol. in press.
Kato Y, Odahara M, *Shikanai T (2021) Evolution of an assembly factor-based subunit contributed to a novel NDH-PSI supercomplex formation in chloroplasts. Nature Commun. 12: 3685.
Higashi H., Kato Y., Fujita Y., Iwasaki S., Nakamura M., Nishimura Y., Takenaka M. and *Shikanai T (2021) The pentatricopeptide repeat protein PGR3 regulates the translation of petL and ndhG by binding their 5'UTRs. Plant Cell Physiol. in press.
Yamamoto H., Sato N. and *Shikanai T (2021) Critical role of NdhA in the incorporation of the peripheral arm into the membrane-embedded part of the chloroplast NADH dehydrogenase-like complex. Plant Cell Physiol. in press.
Yamamoto H. and Shikanai T (2020) Does the Arabidopsis proton gradient regulation 5 mutant leak protons from the thylakoid membrane? Plant Physiol. 184: 421-427.
Basso, L., Yamori, W., Szabo, I., *Shikanai T (2020) Collaboration between NDH and KEA3 allows maximally efficient photosynthesis after a long dark adaptation. Plant Physiol. 184: 2078-2090. <久堀班・矢守研との共同研究>
*Yamamoto H. *Shikanai T (2019) PGR5-dependent cyclic electron flow protects PSI under fluctuating light at donor and acceptor sides. Plant Physiol. 179: 588-600.
Nakano, H., Yamamoto, H., *Shikanai T (2019) Contribution of NDH-dependent cyclic electron transport around photosystem I to the generation of proton motive force in the weak mutant allele of pgr5. BBA-Bioenergetics 1860: 369-374.
Mermod, M., Takusagawa, M., Kurata, T., Kamiya, T., Fujiwara, T., *Shikanai T (2019) SQUAMOSA promoter-binding protein-like 7 mediates copper deficiency response in the presence of high nitrogen in Arabidopsis thaliana. Plant Cell Rep. 38: 835-846.
Ishibashi, K., Small, I., *Shikanai T (2019) Evolutionary model of plastidial RNA editing in angiosperms presumed from genome-wide analysis of Amborella trichopoda. Plant Cell Physiol. 60: 2141-215160.
Wang C. and *Shikanai T (2019) Modification of activity of the thylakoid H+/K+ antiporter KEA3 disturbs ?pH-dependent regulation of photosynthesis. Plant Physiol. 181: 762-773.
Tsujii M, Kera K, Hamamoto S, Kuromori T, Shikanai T, *Uozumi N (2019) Evidence for potassium transport activity of Arabidopsis KEA1-KEA6. Sci. Rep. 9: 10040. <魚住班との共同研究>
Wang C, Takahashi H, *Shikanai T (2018) PROTON GRADIENT REGULATION 5 contributes to ferredoxin-dependent cyclic phosphorylation in ruptured chloroplasts. BBA-Bioenergetics 1859: 1173-1179.
Kato Y., Odahara M., Fukao Y., *Shikanai, T. (2018) Stepwise evolution of supercomplex formation with photosystem I is required for stabilization of chloroplast NADH dehydrogenase-like complex: Lhca5-dependent supercomplex formation in Physcomitrella patens. Plant J. 96: 937-948.
Araki R, Mermod M, Yamasaki H, Kamiya T, Fujiwara T, *Shikanai, T. (2018) SPL7 locally regulates copperhomeostasis-related genes in Arabidopsis. J. Plant Physiol. 224-225: 137-143.
Otani T, Kato Y, *Shikanai, T. (2018) Specific substitutions of light-harvesting complex I proteins associated with photosystem I are required for supercomplex formation with chloroplast NADH dehydrogenase-like complex. Plant J. 94: 122-130.
Wada S, Yamamoto H, Suzuki Y, Yamori Y, Shikanai T, *Makino A (2018) Flavodiiron protein substitutes for cyclic electron flow without competing CO2 assimilation in rice. Plant Physiol. 176: 1509-1518. <久堀班・矢守研との共同研究>
Otani T, Yamamoto H, *Shikanai T (2017) Stromal loop of Lhca6 is responsible for the linker function required for the NDH-PSI supercomplex formation. Plant Cell Physiol. 58: 851-861.
Wang C, Yamamoto H, Narumiya F, Munekage YN, Finazzi G, Szabo I, *Shikanai T (2017) Fine-tuned regulation of the K+/H+ antiporter KEA3 is required to optimize photosynthesis during induction. Plant J. 89: 540-553.
*Shikanai T, Yamamoto H (2017) Contribution of cyclic and pseudo-cyclic electron transport to the formation of proton motive force in chloroplasts. Mol. Plant 10: 20-29.
著書
*Shikanai T (2020) Regulation of photosynthesis by cyclic electron transport around photosystem I. In Hisabori T (ed.) Advances in Botanical Research 96, "ATP Synthase in Photosynthetic Organisms", Elsevier, Chapter 6, pp. 177-204.
計画研究:A01-4(久堀班)
Fu N, Sugiura K, Kondo K, Nakamura S, Wakabayashi KI, Hisabori T. (2021) Monitoring cellular redox dynamics using newly developed BRET-based redox sensor proteins. J. Biol. Chem. 297(4):101186.
Morishita J, Tokutsu R, Minagawa J, Hisabori T, Wakabayashi KI. (2021) Characterization of Chlamydomonas reinhardtii Mutants that exhibit strong positive phototaxis. Plants (Basel) 10(7):1483.
Kondo K, Izumi M, Inabe K, Yoshida K, Imashimizu M, Suzuki T, Hisabori T. (2021) The phototroph-specific β-hairpin structure of the γ subunit of FoF1-ATP synthase is important for efficient ATP synthesis of cyanobacteria. J. Biol. Chem. 297(3):101027.
Luu Trinh MD, Miyazaki D, Ono S, Nomata J, Kono M, Mino H, Niwa T, Okegawa Y, Motohashi K, Taguchi H, Hisabori T, Masuda S.(2021) The evolutionary conserved iron-sulfur protein TCR controls P700 oxidation in photosystem I. iScience 24(2):102059.
Yamori N, Matsushima Y, Yamori W(2021) Upward LED lighting from the base suppresses senescence of lower leaves and promotes flowering in indoor rose management. HortSci. 56: 716–721.
【プレスリリース】
Deschoenmaeker F, Mihara S, Niwa T, Taguchi H, Wakabayashi KI, Toyoshima M, Shimizu H, *Hisabori T. (2021) Thioredoxin pathway in anabaena sp. PCC 7120: activity of NADPH-thioredoxin
reductase C. J Biochem. 169(6):709-719 <清水班との共同研究>
Yokochi Y, Yoshida K, Hahn F, Miyagi A, Wakabayashi KI, Kawai-Yamada M, Weber APM, *Hisabori T. (2021) Redox regulation of NADP-malate dehydrogenase is vital for land plants under fluctuating light environment. Proc Natl Acad Sci U S A. 118(6): e2016903118. 【プレスリリース】<川合班との共同研究>
*Yoshida K, *Hisabori T. (2021) Biochemical basis for redox regulation of chloroplast-localized phosphofructokinase from Arabidopsis thaliana. Plant Cell Physiol. 62(3):401-410
Qu Y, Sakoda K, Fukayama H, Kondo E, Suzuki Y, Makino A, Terashima I, *Yamori W (2021). Overexpression of both Rubisco and Rubisco activase rescues rice photosynthesis and biomass under heat stress. Plant. Cell Environ. 44: 2308-2320.【プレスリリース】<寺島班との共同研究>
Furuya T, Saito M, Uchimura H, Satake A, Nosaki S, Miyakawa T, Shimadzu S, Yamori W, Tanokura M, Fukuda H, Kondo Y (2021) Gene co-expression network analysis identifies BEH3 as a stabilizer of secondary vascular development in Arabidopsis. Plant Cell. 33: 2618-2636.【プレスリリース】
Terashima I, Matsuo M, Suzuki Y, Yamori W, Kono M (2021) Photosystem I in low light-grown leaves of Alocasia odora, a shade-tolerant plant, is resistant to fluctuating light-induced photoinhibition. Photosynth. Res. 149: 69-82.【プレスリリース】<寺島班との共同研究>
Chen Y, Yamori W, Tanaka A, Tanaka R, Ito H (2021) Degradation of the photosystem II core complex is independent of chlorophyll degradation mediated by Stay-Green Mg2+ dechelatase in Arabidopsis. Plant Sci. 110902. <高橋班・田中研との共同研究>
Inoue T, Sunaga M, Ito M, Yuchen Q, Matsushima Y, Sakoda K, *Yamori W (2021) Minimizing VPD Fluctuations Maintains Higher Stomatal Conductance and Photosynthesis, Resulting in Improvement of Plant Growth in Lettuce. Front. Plant Sci. 12: 458.
*Sakoda K, *Yamori W, Groszmann M, Evans JR (2021) Stomatal, mesophyll conductance and biochemical limitations to photosynthesis during induction. Plant Physiology. 185: 146-160. 【プレスリリース】
Takano W, Hisabori T, *Wakabayashi KI. (2020) Rapid estimation of cytosolic ATP concentration from the ciliary beating frequency in the green alga Chlamydomonas reinhardtii. J Biol Chem.296: 100156.【プレスリリース】
Nakamura S, Fu N, Kondo K, Wakabayashi KI, Hisabori T, Sugiura K. (2020) A luminescent Nanoluc-GFP fusion protein enables readout of cellular pH in photosynthetic organisms. J Biol Chem. doi: 296: 100134. 【プレスリリース】
*Hisabori T (2020)Regulation machineries of ATP synthase from phototroph. Adv. Bot. Res. 96: 1-26.
Yoshida K, Ohtaka K, Hirai MY, *Hisabori T (2020) Biochemical insight into redox regulation of plastidial 3-phosphoglycerate dehydrogenase from Arabidopsis thaliana. J Biol Chem.295(44): 14906-14915.
Sekiguchi T, Yoshida K, Okegawa Y, Motohashi K, Wakabayashi KI, *Hisabori T (2020) Chloroplast ATP synthase is reduced by both f-type and m-type thioredoxins. BBA-Bioenergetics 1861(11):148261. <桶川班との共同研究>
Sugiura K, Mihara S, Fu N, *Hisabori T (2020) Real-time monitoring of the in vivo redox state transition using the ratiometric redox state sensor protein FROG/B. Proc Natl Acad Sci U S A. 117(27):16019-16026.【プレスリリース】
Ohkubo S., Tanaka Y., *Yamori W. *Adachi S. (2020). Rice cultivar Takanari has higher photosynthetic performance under fluctuating light than Koshihikari, especially under limited nitrogen supply and elevated CO2. Frontiers in Plant Science, 11, 1308.
Kang H, Zhu X, Yamori W, Tang Y. (2020). Concurrent increases in leaf temperature with light accelerate photosynthetic induction in tropical tree seedlings. Front. Plant Sci. 11, 1216.
Basso L, Yamori W, Szabò I, *Shikanai T (2020) Collaboration between NDH and KEA3 allows maximally efficient photosynthesis after a long dark adaptation. Plant Physiol. 184: 2078-2090. <鹿内班との共同研究>
Busch FA, Tominaga J, Muroya M, Shirakami N, Takahashi S, Yamori W, Kitaoka T, Milward SE, Nishimura K, Matsunami E, Toda Y, Higuchi C, Muranaka A, Takami T, Watanabe S, Kinoshita T, Sakamoto W, Sakamoto A, *Shimada H (2020) Overexpression of BUNDLE SHEATH DEFECTIVE 2 improves the efficiency of photosynthesis and growth in Arabidopsis. Plant J. 102: 129-137.
Monda K, Mabuchi A, Takahashi S, Negi J, Tohmori R, Terashima I, Yamori W, and Iba K (2020) Increased cuticle permeability caused by a new allele of ACETYL-COA CARBOXYLASE 1 enhances CO2 uptake. Plant Physiol. 184: 1917-1926. <寺島班との共同研究>
Sakoda K, Yamori W, Shimada T, Sugano SS, Hara-Nishimura I, Tanaka Y (2020) Higher Stomatal Density Improves Photosynthetic Induction and Biomass Production in Arabidopsis under Fluctuating Light. Front. Plant Sci. 11: 1609.
Kimura H, Hashimoto-Sugimoto M, Iba K, Terashima I, *Yamori W (2020). Improved stomatal opening enhances photosynthetic rate and biomass production in fluctuating light . J. Exp. Bot. 71: 2339-2350. 【
プレスリリース】<寺島班との共同研究>
28 *Yamori W, Kusumi K, Iba K, Terashima I (2020). Increased stomatal conductance induces rapid changes to photosynthetic rate in response to naturally fluctuating light conditions in rice. Plant, Cell Environ. 43: 1230-1240. <寺島班との共同研究>
*Kono M, Kawaguchi H, Mizusawa N, Yamori W, Suzuki Y, Terashima I (2020) Far-Red Light Accelerates Photosynthesis in the Low-Light Phases of Fluctuating Light. Plant Cell Physiol. 61: 192-202. 【プレスリリース】<寺島班との共同研究>
Kyuji A, Patel-King RS, Hisabori T, King SM, Wakabayashi KI (2020) Cilia Loss and Dynein Assembly Defects in Planaria Lacking an Outer Dynein Arm-Docking Complex Subunit. Zoolog. Sci. 37(1): 7-13.
Mihara S, Sugiura K, Yoshida K, *Hisabori T (2020) Thioredoxin targets are regulated in heterocysts of cyanobacterium Anabaena sp. PCC 7120 in a light-independent manner. J. Exp. Bot. 71(6): 2018-2027.
Shimadzu S, Seo M, Terashima I, *Yamori W (2019) Whole irradiated plant leaves showed faster photosynthetic induction than individually irradiated leaves via improved stomatal opening. Front. Plant Sci. 10, 1512. 【プレスリリース】<寺島班との共同研究>
Adachi S, Tanaka Y, Miyagi A, Kashima M, Tezuka A, Toya Y, Kobayashi S, Ohkubo S, Shimizu H, Kawai-Yamada M, Sage RF, Nagano AJ *Yamori W. (2019) High-yielding rice Takanari has superior photosynthetic response under fluctuating light to a commercial rice Koshihikari. J. Exp. Bot. 70, 5287-5297. <清水班との共同研究><川合班との共同研究>
*Tanaka Y, Adachi S, Yamori W (2019) Natural genetic variation of the photosynthetic induction response to fluctuating light environment. Curr. Opin. Plant Biol. 49: 52-59.
Yoshida K, Yokochi Y, *Hisabori T (2019) New Light on Chloroplast Redox Regulation: Molecular Mechanism of Protein Thiol Oxidation. Front Plant Sci. 10: 1534.
Yokochi Y, Sugiura K, Takemura K, Yoshida K, Hara S, Wakabayashi KI, Kitao A, *Hisabori T (2019) Impact of key residues within chloroplast thioredoxin-f on recognition for reduction and oxidation of target proteins. J. Biol, Chem. 294(46): 17437-17450.
Sugiura, K. Yokochi, Y., Fu, N., Fukaya, Y., Yoshida, K., Mihara, S., *Hisabori T (2019) The thioredoxin (Trx) redox-state sensor protein can visualize Trx activities in the light-dark response in chloroplasts. J Biol Chem. 294(32): 12091-12098.【プレスリリース】
*Yoshida, K., Uchikoshi, E., Hara, S., *Hisabori T (2019) Thioredoxin-like2/2-Cys peroxiredoxin redox cascade acts as oxidative activator of glucose-6-phosphate dehydrogenase in chloroplasts. Biochem J. 476(12): 1781-1790.
Akiyama, K., Kondo ,K., Inabe, K., Murakami, S., Wakabayashi, K.I., *Hisabori T (2019) The β-hairpin region of cyanobacterial F(1)-ATPase γ subunit plays a regulatory role in the enzyme activity. Biochem J. 476(12): 1771-1780.
Inabe, K., Kondo, K., Yoshida, K., Wakabayashi, K.I., *Hisabori T (2019) The N-terminal region of the e subunit from cyanobacterial ATP synthase alone can inhibit ATPase activity. J Biol Chem. 294(26): 10094-10103.
Deschoenmaeker, F., Mihara, S., Niwa, T, Taguchi, H., Nomata, J., Wakabayashi, K.I., *Hisabori T (2019) Disruption of the Gene trx-m1 Impedes the Growth of Anabaena sp. PCC 7120 under Nitrogen Starvation. Plant Cell Physiol 60(7): 1504-1513.
Sugiura, K., Tanaka, H., Kurisu, G., Wakabayashi, K.I., *Hisabori T(2019) Multicolor redox sensor proteins can visualize redox changes in various compartments of the living cell. Biochim. Biophys. Acta Gen. Subj. 1863(6): 1098-1107. <栗栖班との共同研究>
*Yoshida, K., *Hisabori T (2019) Determining the Rate-Limiting Step for Light-Responsive Redox Regulation in Chloroplasts. Antioxidants (Basel).7(11):153.
*Yoshida, K., Hara, A., Sugiura, K., Fukaya, Y., *Hisabori T (2018) Thioredoxin-like2/2-Cys peroxiredoxin redox cascade supports oxidative thiol modulation in chloroplasts. Proc. Natl. Acad. Sci. U S A 115(35): E8296-E8304. 【プレスリリース】
Sugiura, K., Nishimaki, Y., Owa M., Hisabori, T., *Wakabayashi, K.I. (2018) Assessment of the flagellar redox potential in Chlamydomonas reinhardtii using a redox-sensitive fluorescent protein, Oba-Qc. Biochem. Biophys. Res, Commun. 503(3): 2083-2088.
Deschoenmaeker F, Mihara S, Niwa T, Taguchi H, Wakabayashi KI, *Hisabori T (2018) The Absence of Thioredoxin m1 and Thioredoxin C in Anabaena sp. PCC 7120 Leads to Oxidative Stress. Plant Cell Physiol. 59(12): 2432-2441.
Murakami, S., Kondo, K., Katayama, S., Hara, S., Sunamura, E.I., Yamashita, E., Groth, G., *Hisabori, T. (2018) Structure of the γ-ε complex of cyanobacterial F(1)-ATPase reveals a suppression mechanism of the γ subunit on ATP hydrolysis in phototrophs. Biochem J. 475(18): 2925-2939.
Hashida SN, Miyagi A, Nishiyama M, Yoshida K, Hisabori T, *Kawai-Yamada M(2018) Ferredoxin/thioredoxin system plays an important role in the chloroplastic NADP status of Arabidopsis. Plant J. 95(6): 947-960. <川合班との共同研究>
Kondo K, Takeyama Y, Sunamura EI, Madoka Y, Fukaya Y, Isu A, *Hisabori T(2018) Amputation of a C-terminal helix of the γ subunit increases ATP-hydrolysis activity of cyanobacterial F(1) ATP synthase. Biochim Biophys Acta Bioenerg. 1859(5): 319-325.
Tewolde FT, Shiina K, Maruo T, Takagaki M, Kozai T, *Yamori W (2018) Supplemental LED inter-lighting compensates for a shortage of light for plant growth and yield under the lack of sunshine. PloS One 13: e0206592.
Ohtake N, Ishikura M, Suzuki H, Yamori W, Goto E(2018) Continuous irradiation with alternating red and blue light enhances plant growth while keeping nutritional quality in lettuce. HortSci. 53:1804-1809.
*Goto E, Suetsugu N, Yamori W, Ishishita K, Kiyabu R, Fukuda M, Higa T, Shirouchi B, Wada M (2018) Chloroplast accumulation response enhances leaf photosynthesis and plant biomass production. Plant Physiology 178: 1358-1369.【プレスリリース】<後藤班との共同研究>
Yoshida Y, Sarmiento-Mañús R, Yamori W, Ponce MR, Micol JL, *Tsukaya H (2018) The Arabidopsis phyB-9 Mutant Has a Second-Site Mutation in the VENOSA4 Gene That Alters Chloroplast Size, Photosynthetic Traits, and Leaf Growth. Plant Physiol. 178: 3-6.
Wada S, Yamamoto H, Suzuki Y, Yamori W, Shikanai T, *Makino A (2018) Flavodiiron protein substitutes for cyclic electron flow without competing CO2 assimilation. Plant physiol. 176: 1509-1518. <鹿内班との共同研究>
Mihara S, Wakao H, Yoshida K, Higo A, Sugiura K, Tsuchiya A, Nomata J, Wakabayashi KI, *Hisabori T (2018) Thioredoxin regulates G6PDH activity by changing redox states of OpcA in the nitrogen-fixing cyanobacterium Anabaena sp. PCC 7120. Biochem J. 475(6): 1091-1105.
*Yoshida K, *Hisabori T (2017) Distinct electron transfer from ferredoxin-thioredoxin reductase to multiple thioredoxin isoforms in chloroplasts. Biochem. J. 474: 1347-1360.
Ushijima T, Hanada K, Gotoh E, Yamori W, Kodama Y, Tanaka H, Kusano M, Fukushima A, Tokizawa M, Yamamoto YY, Tada Y, Suzuki Y, *Matsushita T (2017) Light Controls Protein Localization through Phytochrome-Mediated Alternative Promoter Selection. Cell 171: 1316-1325. <松下班との共同研究>
Seta A, Tabara M, Nishibori Y, Hiraguri A, Ohkama-Ohtsu N, Yokoyama T, Hara S, Yoshida K, Hisabori T, Fukudome A, Koiwa H, Moriyama H, Takahashi N, *Fukuhara T (2017) Post-translational regulation of the dicing activities of Arabidopsis DICER-LIKE 3 and 4 by inorganic phosphate and the redox state. Plant Cell Physiol. 58: 485-495.
Mihara S, Yoshida K, Higo A, *Hisabori T (2017) Functional significance of NADPH-thioredoxin reductase C in the antioxidant defense system of cyanobacterium Anabaena sp. PCC 7120. Plant Cell Physiol. 58: 86-94.
*Kono M, Yamori W, Suzuki Y, Terashima I (2017) Photoprotection of PSI by Far-red Light Against the Fluctuating Light-induced Photoinhibition in Arabidopsis thaliana and Field-grown Plants. Plant Cell Physiol. 58: 35-45. <寺島班との共同研究>
著書
Yamori W* (2021) Strategies for engineering photosynthesis for enhanced plant biomass production. In "Rice Improvement: Physiological, Molecular Breeding and Genetic Perspectives" Springer-Nature, pp.31-58.
迫田和馬, 矢守 航 (2021) 変動光に対する光合成応答メカニズム―CO2 拡散プロセスに焦点をあてて, 光合成研究, 31, pp. 14-28.
*久堀 徹 (2018) チオレドキシンファミリーとエネルギー代謝. 実験医学, vol. 36 (5) pp. 87-93.
計画研究:A01-5(宗景班)
Tanaka M, Ishikawa Y, Suzuki S, Ogawa T, Taniguchi YY, Miyagi A, Ishikawa T, Yamaguchi M, Munekage YN, *Kawai-Yamada M (2021) Change in expression levels of NAD kinase-encoding genes in Flaveria species. J. Plant Physiol. 265: 153495. <川合班の共同研究>
Taniguchi Y. Y., Gowik U., Kinoshita Y., KishizakiR., Ono, N., Yokota A., Peter W., and *Munekage YN, Dynamic changes of genome sizes and gradual gain of elevation and cell-specific distribution of C4 cycle enzymes during C4 evolution in genus Flaveria. The Plant genome, e20095
*Nishimura K., Nakagawa R., Hachisuga C., Munekage YN (2021) Deciphering the proteotoxic stress responses triggered by the perturbed thylakoid proteostasis in Arabidopsis. Plants, 10(3), 519
Nawaly H, Tsuji Y, *Matsuda Y (2020) Rapid and precise genome editing in a marine diatom, Thalassiosira pseudonana by Cas9 nickase. Algal Research 47: 101855.
Tsuji Y, *Matsuda Y (2019) Uncovering the hidden world of molecular life of diatoms. Perspect. Phycol. 6: 51-58.
Broddrick, J.T., Du, N., Smith, S.R, Tsuji, Y., Jallet, D., Peers, G., Matsuda, Y., Dupont, C.L., B. Mitchell, G., Palsson, B.O., *Allen, A.E. (2019) Cross-compartment metabolic coupling enables flexible photoprotective mechanisms in the diatom Phaeodactylum tricornutum. New Phytol., 222: 1364-1379.
*Eve D, Tachibana M, Kikutani S, Gruber A, Rio Bartulos C, Konert G, Kaplan A, Matsuda Y, Kroth PG (2018) The intracellular distribution of inorganic carbon fixing enzymes does not support the presence of a C4 pathway in the diatom Phaeodactylum tricornutum. Photosynth. Res. 137: 263.
Matsui H, Hopkinson BM, Nakajima K, *Matsuda Y (2018) Plasma membrane-type aquaporins from marine diatoms function as CO2/NH3 channels and provide photoprotection. Plant Physiol. 178: 345-357.
*Matsuda Y, Hopkinson BM, Nakajima K, Dupont CL, Tsuji Y (2017) Mechanisms of carbon dioxide acquisition and CO2 sensing in marine diatoms ? A gateway to carbon metabolism. Philos. Trans. R. Soc. Lond. B Biol. Sci. 372: 20160403.
Tsuji Y, Mahardika A, *Matsuda Y (2017) Evolutionary distinct strategies for the acquisition of inorganic carbon from seawater in marine diatoms. J. Exp. Bot. 68: 3949-3958.
Tsuji Y, Nakajima K, *Matsuda Y (2017) Molecular aspects of the biophysical CO2-concentrating mechanism and its regulation in marine diatoms. J. Exp. Bot. 68: 3763-3772.
Shimakawa G, Matsuda Y, Nakajima K, Tamoi M, Shigeoka S, *Miyake C (2017) Diverse strategies of O2 usage for preventing photo-oxidative damage under CO2 limitation during algal photosynthesis. Sci. Rep. 7: 41022.
Kikutani S, Nakajima K, Nagasato C, Tsuji Y, Miyatake A, *Matsuda Y (2016) Thylakoid luminal θ-carbonic anhydrase critical for growth and photosynthesis in the marine diatom Phaeodactylum tricornutum. Proc. Natl. Acad. Sci. USA. 113: 9828-9833.
*Hopkinson BM, Dupont CL, Matsuda Y (2016) The physiology and genetics of CO2 concentrating mechanisms in model diatoms. Curr. Opin. Plant Biol. 31: 51-57.
著書
*Tsuji Y, Yoshida M (2017) Biology of haptophytes: complicated cellular processes driving the global carbon cycle. In “Advances in Botanical Research Vol. 84, Secondary Endosymbioses” edited by Hirakawa, Y., Academic Press, London, United Kingdom, Chapter 7, pp. 219-261.
計画研究:A02-1(魚住班)
Maeda K, Okuda Y, Enomoto G, Watanabe S, *Ikeuchi M (2021) Biosynthesis of a sulfated exopolysaccharide, Synechan, and bloom formation in the model cyanobacterium Synechocystis sp. strain PCC 6803. eLife, 10:e66538.
Sugawara, K., Toyoda, H., Kimura, M., Hayasaka, S., Saito, H., Kobayashi, H., Ihara, K., Ida, T., Akaike, T., Ando, E., Hyodo, M., Hayakawa, Y., Hamamoto, S., and *Uozumi, N (2021) Loss of cell wall integrity genes cpxA and mrcB causes flocculation in Escherichia coli. Biochem. J. 478:41-59 (2021) doi.org/10.1042/BCJ20200723
Kera K, Yoshizawa Y, Shigehara T, Nagayama T, Tsujii M, Tochigi S, *Uozumi, N (2020) Hik36-Hik43 and Rre6 act as a two-component regulatory system to control cell aggregation in Synechocystis sp. PCC6803. Sci. Rep. 10: 19405.
Uehara, C., Takeda, K., Ibuki, T., Furuta, T., Hoshi, N., Tanudjaja, E. and *Uozumi, N (2020) Analysis of Arabidopsis TPK2 and KCO3 reveals structural properties required for K+ channel function. Channels, 14, 336-346.
Tsujii, M., Tanudjaja E. and *Uozumi, N (2020) Diverse physiological functions of cation proton antiporters across bacteria and plant cells. Int. J. Mol. Sci., 21 (12), 4566 (2020).
Saito, S., and *Uozumi, N (2020) Calcium-regulated phosphorylation systems controlling uptake and balance of plant nutrients. Front. Plant Sci., 11:44
Ishikawa, K., Chubachi, C., Tochigi, S., Hoshi, N., Kojim, S., Hyodo, M., Hayakawa, Y., Furuta, T., Kera, K. and *Uozumi, N (2020) Functional characterization of multiple PAS domain-containing diguanylate cyclases in Synechocystis sp. PCC6803. Microbiology, 166, 659-668.
Shimada, N. Okuda, Y., Maeda, K., Umeno, D., Takaichi, S., Ikeuchi M (2020) Astaxanthin production in a model cyanobacterium Synechocystis sp. PCC 6803 J. Gen. Appl. Microbiol. 66(2): 116-120.
Enomoto, G., Kamiya, A., Okuda, Y., Narikawa, R., Ikeuchi M (2020) Tlr0485 is a cAMP-activated c-di-GMP phosphodiesterase in a cyanobacterium Thermosynechococcus. J. Gen. Appl. Microbiol. 66: 147-152.
Chin T, Okuda Y, *Ikeuchi M (2019) Improved sorbitol production and growth in cyanobacteria using promiscuous haloacid dehalogenase-like hydrolase. J. Biotechnol. 1: 100002.
Harada, K., Arizono, T., Sato, R., Trinh, M.D.L., Hashimoto, A., Kono, M., Tsujii, M., Uozumi, N., Takaichi, S., and *Masuda, S. (2019) DAY-LENGTH-DEPENDENT DELAYED-GREENING1, the Arabidopsis homolog of the cyanobacterial H+-extrusion protein, is essential for chloroplast pH regulation and optimization of non-photochemical quenching. Plant Cell Physiol. 60 (12), 2660-2671 (2019). <増田班との共同研究>
Amemiya S. Toyoda H, Kimura M, Saito H, Kobayashi H, Ihara K. Kamagata K, Kawabata R, Kato S, Nakashimada Y. Furuta T, Hamamoto S. *Uozumi, N (2019) The mechanosensitive channel YbdG from Escherichia coli has a role in adaptation to osmotic up-shock. J. Biol. Chem. 294: 12281-12292.
Tsujii, M., Kera, K., Hamamoto, S., Kuromori, T., Shikanai, T., *Uozumi, N (2019) Evidence for potassium transport activity of Arabidopsis KEA1-KEA6. Sci. Rep. 9, 10040. <鹿内班との共同研究>
Saito, S., *Uozumi, N (2019) Guard cell membrane anion transport systems and their regulatory components: An elaborate mechanism controlling stress-induced stomatal closure. Plants 8: 9.
Adams, E., Miyazaki, T., Saito, S., *Uozumi, N, *Shin, R. (2019) Cesium inhibits plant growth primarily through reduction of potassium influx and accumulation in Arabidopsis. Plant Cell Physiol. 60: 63-76.
Saito S, Hamamoto S, Moriya K, Matsuura A, Sato Y, Muto J, Noguchi H, Yamauchi S, Tozawa Y, Ueda M, Hashimoto K, Koster P, Qiuyan D, Held K, Kudla J, Utsumi T, *Uozumi, N (2018) N-myristoylation and Sacylation are common modifications of Ca2+ regulated Arabidopsis kinases and are required for activation of the SLAC1 anion channel. New Phytol. 218: 1504-1521.
Hamamoto S, Mori Y, Yabe I, *Uozumi, N (2018) In vitro and in vivo characterization of modulation of the vacuolar cation channel TRPY1 from Saccharomyces cerevisiae. FEBS J. 285: 1146-1161.
Kera K, Nagyama T, Nanatani K, Saeki-Yamoto C, Tominaga A, Souma S, Miura N, Takeda K, Kayamori S, Ando E, Higashi K, Igarashi K, *Uozumi, N (2018) Reduction of spermidine content resulting from inactivation of two arginine decarboxylases increases biofilm formation in Synechocystis sp. PCC 6803. J. Bacteriol. 200: E00664-17.
Chang,D., Sakuma, S., Kera, K., Uozumi, N *Arai F. (2018) Measurement of mechanical properties of single Synechocystis sp. strain PCC 6803 cells in different osmotic concentrations using robot integrated microfluidic chip. Lab. Chip 18: 1241-1249.
Oikawa, T., Ishimaru, Y., Munemasa, S., Takeuchi, Y., Washiyama, K. Hamamoto, S., Yoshikawa, N., Mutara, Y., Uozumi, N, *Ueda, M. (2018) Ion channels regulate nyctinastic leaf opening in Samanea saman. Current Biology 28: 2230-2238.
Toh S, Inoue S, Toda Y, Yuki T, Suzuki K, Hamamoto S, Fukatsu K, Aoki S, Uchida M, Asai E, Uozumi, N, SatoA, *Kinoshita T (2018) Identification and characterization of compounds that affect stomatal movements. Plant Cell Physiol. 59: 1568-1580.
Tanudjaja E, Hoshi N, Su Y-S, Hamamoto S, *Uozumi, N (2017) Kup-mediated Cs+ uptake and Kdp-driven K+ uptake coordinate to promote cell growth during excess Cs+ conditions in Escherichia coli. Sci. Rep. 7: 2122.
Tatsumi D, Nanatani K, Koike Y, Kamagata K, Takahashi S, Konno A, Furuta T, Sakurai M, *Uozumi, N (2017) Probing native metal ion association sites through quenching of fluorophores in the nucleotide binding domains of the ABC transporter MsbA. Biochem. J. 474: 1993-2007.
Saito S, Hoshi N, Zulkifli L, Widyastutib S, Goshima S, Dreyer I, *Uozumi, N (2017) Identification of regions responsible for the function of the plant K+ channels KAT1 and AKT2 in Saccharomyces cerevisiae and Xenopuslaevis oocytes. Channels 11: 510-516.
Mishima E, Sato Y, Nanatani K, Hoshi N, Lee J-K, Schiller N, von Heijne G, Sakaguchi M, *Uozumi, N (2016) The topogenic function of S4 promotes membrane insertion of the voltage-sensor domain in the KvAP channel. Biochem. J. 473: 4361-4372.
Nishii M, Ito S, Katayama N, Osanai T (2021) Biochemical elucidation of citrate accumulation in Synechocystis sp. PCC 6803 via kinetic analysis of aconitase. Sci. Rep. 11; 17131.
Toyoshima M, Sakata M, Ueno M, Toya Y, Matsuda F, Akimoto S,*Shimizu H (2021) Proteome analysis of response to different spectral light irradiation in Synechocystis sp. PCC 6803. Jour Proteomics. 246; 104306. (2021) <皆川班との共同研究>
Iijima H, Watanabe A, Sukigara H, Iwazumi K, Shirai T, Kondo A, *Osanai T (2021) Four-carbon dicarboxylic acid production through the reductive branch of the open cyanobacterial tricarboxylic acid cycle in Synechocystis sp. PCC 6803. Metab. Eng.65: 88-98. プレスリリース
Ito S, Hakamada T, Ogino T, *Osanai T (2021) Reconstitution of oxaloacetate metabolism in the tricarboxylic acid cycle in Synechocystis sp. PCC 6803: discovery of important factors that directly affect the conversion of oxaloacetate. Plant J. 105(6): 1449-1458 【プレスリリース】
Yoshida C, Murakami M, Niwa A, Masahiro T, *Osanai T (2021) Efficient extraction and preservation of thermotolerant phycocyanins from red alga Cyanidioschyzon merolae.J. Biosci. Bioeng. 131(2): 161-167.
Yoshikawa K, Ogawa K, Toya Y, Akimoto S, Matsuda F, *Shimizu H (2021) Mutations in hik26 and slr1916 lead to high-light stress tolerance in Synechocystis sp. PCC6803. Commun. Biol. 4: 343 <皆川班・秋本研との共同研究>
Deschoenmaeker F, Mihara S, Niwa T, Taguchi H, Wakabayashi K, Toyoshima M, Shimizu H, Hisabori T (2021) Thioredoxin pathway in Anabaena sp. PCC 7120: case of the NADPH-thioredoxin reductase C. J. Biochem. 169; 709-719. <久堀班との共同研究>
ToyoshimaM, Yamamoto C, Ueno Y, Toya Y, Akimoto S, Shimizu H (2021) Role of type I NADH dehydrogenase in Synechocystis sp. PCC 6803 under phycobilisome excited red light. Plant Sci. 304: 110798. <皆川班・秋本研との共同研究>
Nishiguchi H, Liao J, Shimizu H , *Matsuda F (2020) Novel allosteric inhibition of phosphoribulokinase identified by ensemble kinetic modeling of Synechocystis sp. PCC 6803 metabolism. Metab. Eng. Commun. 11: e00153.
Yamamoto C, Toyoshima M, Kitamura S, Ueno Y, Akimoto S, Toya Y, *Shimizu H (2020) Estimation of linear and cyclic electron flows in photosynthesis based on 13C-metabolic flux analysis. J. Biosci. Bioeng. 131(3): 277-282. <皆川班・秋本研との共同研究>
Toyoshima M, Tokumaru U, Matsuda F, *Shimizu H (2020) Assessment of protein content and phosphorylation level in Synechocystis sp. PCC 6803 under various growth conditions using quantitative phosphoproteomic analysis. Molecules 25(16): 3582.
Yoshioka K, Suzuki K, *Osanai T (2020) Effect of pH on metabolite excretion and cell morphology of Euglena gracilis under dark, anaerobic conditions. Algal Res. 51: 102084. doi: 10.1016/j.algal.2020.102084 【プレスリリース】
Ito S, Iwazumi K, Sukigara H, *Osanai T (2020) Fumarase from Cyanidioschyzon merolae stably shows high catalytic activity for fumarate hydration under high temperature conditions. Front. Microbiol. 11: 2190. 【プレスリリース】
Iijima H, Watanabe A, Sukigara H, Shirai T, Kondo A, *Osanai T (2020) Simultaneous increases in the levels of compatible solutes by cost-effective cultivation of Synechocystis sp. PCC 6803. Biotechnol. Bioeng. 117: 1649-1660. 【プレスリリース】
Kizawa A, *Osanai T (2020) Overexpression of the response regulator rpaA causes an impaired cell division in the cyanobacterium Synechocystis sp. PCC 6803. 66: 121-128.
Ito S, *Osanai T (2020) Unconventional biochemical regulation of the oxidative pentose phosphate pathway in the model cyanobacterium Synechocystis sp. PCC 6803. Biochem. J. 477: 1309-1321. 【プレスリリース】
Toyoshima, M., Toya, Y., *Shimizu, H (2020) Flux balance analysis of cyanobacteria reveals selective use of photosynthetic electron transport components under different spectral light conditions. Photosynth. Res. 143:31-43.
Tomita Y, Takeya M, Suzuki K, Nitta N, Higuchi C, Marukawa-Hashimoto Y, *Osanai T (2019) Amino acid excretion from Euglena gracilis cells in dark and anaerobic conditions. Algal Res. 37: 169-177. 【プレスリリース】
Adachi S, Tanaka Y, Miyagi A, Kashima M, Tezuka A, Toya Y, Kobayashi S, Ohkubo S, Shimizu, H, Kawai-Yamada M, Sage RF, Nagano AJ, *Yamori W (2019) High-yielding rice Takanari has superior photosynthetic response under fluctuating light to a commercial rice Koshihikari. J. Exp. Bot. 70, 5287-5297. <久堀班・矢守研との共同研究>
Katayama, N., Takeya, M., *Osanai T (2019) Biochemical characterisation of fumarase C from a unicellular cyanobacterium demonstrating its substrate affinity, altered by and amino acid substitution. Sci. Rep. 9: 10629. 【プレスリリース】
Maruyama, M, Nishiguchi, H, Toyohima, M, Okahashi, N, *Matsuda, F, Shimizu H (2019) Time-resolved analysis of short term metabolic adaptation at dark transition in Synechocystis sp. PCC6803. Jour Biosci Bioeng. 128(4): 424-428.
Nishiguchi, H, Hiasa, N, Uebayashi, K, Liao, J, Shimizu H, *Matsuda, F, (2019) Transomics data-driven, ensemble kinetic modeling for system-level understanding and engineering of the cyanobacteria central metabolism. Metabolic Engineering, 52: 273-283.
Toyoshima M, Sakata M, Ohnishi K, Tokumaru Y, Kato Y, Tokutsu R, Sakamoto W, Minagawa J, Matsuda F, *Shimizu H (2019) Targeted proteome analysis of microalgae under high-light conditions by optimized protein extraction of photosynthetic organisms. J Biosci Bioeng. 127(3): 394-402. <皆川班との共同研究><高橋班・坂本研との共同研究>
Arisaka, S, Terahara N, Oikawa, A, *Osanai, T (2019) Increased polyhydroxybutyrate levels by ntcA overexpression in Synechocystis sp. PCC 6803. Algal Res. 41: 101565. 【プレスリリース】
Ito S, Koyama N, *Osanai, T (2019) Citrate synthase from Synechocystis is a distinct class of bacterial citrate synthase. Sci Rep. 9(1) 6038.【プレスリリース】
Ito S, *Osanai, T (2018) Single amino acid change in 6-phosphogluconate dehydrogenase from Synechocystis conveys higher affinity for NADP+ and altered mode of inhibition by NADPH. Plant Cell Physiol. 59(12): 2452-2461. 【プレスリリース】
Katayama N, Iijima H, *Osanai, T (2018) Production of bioplastic compounds by genetically manipulated and metabolic engineered cyanobacteria. Adv Exp Med Biol. 1080:155-169.
Takeya M, Ito S, Sukigara H, *Osanai, T (2018) Purification and characterisation of malate dehydrogenase from Synechocystis sp. PCC 6803: biochemical barrier of the oxidative tricarboxylic acid cycle. Front. Plant Sci. 9: 947. 【プレスリリース】
Ogawa K, Yoshikawa K, Matsuda F, Toya Y, *Shimizu H (2018) Transcriptome analysis of the cyanobacterium Synechocystis sp. PCC 6803 and mechanisms of photoinhibition tolerance under extreme high light conditions. J Biosci Bioeng. 126(5): 596-602.
Tokumaru Y, Uebayashi K, Toyoshima M, Osanai T, Matsuda F, *Shimizu H (2018) Comparative targeted proteomics of the central metabolism and the photosystems in the SigE mutant strains of Synechocystis sp. PCC 6803. Molecules 23(5): 1051.
Ueda K, Nakajima T, Yoshikawa K, Toya Y, Matsuda F, *Shimizu H (2018) Metabolic flux of the oxidative pentose phosphate pathway under low light conditions in Synechocystis sp. PCC 6803. J. Biosci. Bioeng. 126(1): 38-43.
Arisaka, S., Sukigara, H., *Osanai, T (2018) Genetic manipulation to overexpress rpaA altered photosynthetic electron transport in Synechocystis sp. PCC6803. J. Biosci. Bioeng. 126: 139-144.
Takeya M, Iijima H, Sukigara H, *Osanai, T (2018) Cluster-level relationships of genes involved in carbon metabolism in Synechocystis sp. PCC 6803: development of a novel succinate-producing strain. Plant Cell Physiol. 59: 72-81.
Matsusako T, Toya Y, Yoshikawa K, *Shimizu H (2017) Identification of alcohol stress tolerance genes of Synechocystis sp. PCC 6803 by using adaptive laboratory evolution. Biotechnol for Biofuel 10: 308.
Yoshikawa K, Toya Y, *Shimizu H (2017) Metabolic engineering of Synechocystis sp. PCC 6803 for enhanced ethanol production based on flux balance analysis. Bioprocess Biosyst. Eng. 40: 791-796.
Nakajima T, Yoshikawa K, Toya Y, Matsuda F, *Shimizu H (2017) Metabolic flux analysis of Synechocystis sp. PCC6803 nrtABCD mutant reveals a mechanism for metabolic adaptation to nitrogen-limited conditions. Plant Cell Physiol. 58: 537-545.
*Matsuda F, Tomita A, Shimizu H (2017) Prediction of hopeless peptides unlikely to be selected for targeted proteome analysis. Mass Spectrometry 6: A0056.
Ito S, Takeya M, *Osanai T (2017) Substrate specificity and allosteric regulation of a D-lactate dehydrogenase from a unicellular cyanobacterium are altered by an amino acid substitution. Sci. Rep. 7: 15052.
Yasuda C, Iijima H, Sukigara H, *Osanai T (2017) Incubation of cyanobacteria under dark, anaerobic conditions and quantification of the excreted Organic acids by HPLC. Bio-protocol 7: e225.
*Osanai T, Kuwahara A, Otsuki H, Saito K, Hirai M (2017) ACR11 is an activator of plastid-type glutaminesynthetase GS2 in Arabidopsis thaliana. Plant Cell Physiol. 58: 650-657.
*Osanai T, Park YI, Nakamura Y (2017) Editorial: biotechnology of microalgae, based on molecular biology and biochemistry of eukaryotic algae and cyanobacteria. Frontiers in Microbiology 8: 118.
Takeya M, Hirai M, *Osanai T (2017) Allosteric inhibition of phosphoenolpyruvate carboxylases is determined by a single amino acid residue in cyanobacteria. Sci. Rep. 7: 41080.
Namakoshi K, Nakajima T, Yoshikawa K, Toya Y, *Shimizu H (2016) Combinatorial deletions of glgC and phaCE enhance ethanol production in Synechocystis sp. PCC 6803. J. Biotechnol 10: 13-19.
Tomita Y, Yoshioka K, Iijima H, Nakashima A, Iwata O, Suzuki K, Hasunuma T, Kondo A, Hirai M, *Osanai T (2016) Succinate and lactate production from Euglena gracilis during dark, anaerobic conditions. Frontiers in Microbiology 7: 2050.
Ueda S, Kawamura Y, Iijima H, Nakajima, M, Shirai T, Okamoto M, Kondo A, Hirai MY, *Osanai T (2016) Anionic metabolite biosynthesis enhanced by potassium under dark, anaerobic conditions in cyanobacteria. Sci. Rep. 6: 32354.
著書
*Shimizu H, Furusawa C, Hirasawa T, Yoshikawa K, Toya Y, Shirai T, Matsuda F (2017) Omics integrations for the state analysis of microbial processes. In Yoshida T (ed.) “Applied Bioengineering: Innovations and Future Directions”, Wiley-VCH, Weinheim, Chapter 7, pp. 213-236.
計画研究:A02-3(栗栖班)
Saitoh Y, Mitani-Ueno N, Saito K, Matsuki K, Huang S, Yang L, Yamaji N, Ishikita H, Shen JR, *Ma JF, *Suga M (2021) Structural basis for high selectivity of a rice silicon channel Lsi1 Nat. Commun. 9 in press. 1These authors contributed equally to this work.
Kanda T1, Saito K1, *Ishikita H (2021) Electron acceptor-donor Fe sites in the iron-sulfur cluster of photosynthetic electron-transfer pathways J. Phys. Chem. Lett. 12 (2021) 7431-7438. 1These authors contributed equally to this work.
Sugo Y, Saito K, *shikita H (2021) Mechanism of the formation of proton transfer pathways in photosynthetic reaction centers. JProc. Natl. Acad. Sci. U S A, 118 (2021) e2103203118.
*Juniar L, Adlfar V, Hippler M, Tanaka H, *Kurisu G (2021) Crystallographic analysis and phasing of iron-assimilating protein 1 (FEA1) from Chlamydomonas reinhardtii. Acta Crystallogr. F. Struct. Biol. Commun. 77(Pt 5): 134-139.
Orkun Ç, Frank A, Tanaka H, Kawamoto A, El-Mohsnawy E, Kato T, Namba K, *Gerle C, *Nowaczyk MM, *Kurisu GG (2021) Cryo-EM structure of a functional monomeric Photosystem I from Thermosynechococcus elongatus reveals red chlorophyll cluster. Commun. Biol. 4(1): 304.
*Saito K, Nakagawa M, Mandal M, *Ishikita H (2021) Role of redox-inactive metals in controlling the redox potential of heterometallic manganese-oxido clusters. Photosynth. Res. in press.
*Tamura H, Saito K, Ishikita H. (2021) Origin of unidirectional charge separation in photosynthetic reaction centers: nonadiabatic quantum dynamics of exciton and charge in the pigment-protein complexes. Chem. Sci. in press.
Mandal M, Saito K, *Ishikita H (2021) Two distinct oxygen-radical conformations in the X‑ray free electron laser structures of photosystem II. J. Phys. Chem. Lett. 12: 4032-4037.
Mitsuhashi K, Tamura H, Saito K, *Ishikita H (2021) Nature of asymmetric electron transfer in the symmetric pathways of photosystem I. J. Phys. Chem. B 125: 2879-2885.
Kuroda H, Kawashima K, Ueda K, Ikeda T, Saito K, Ninomiya R, Hida C, *Takahashi Y, *H Ishikita (2021) Proton transfer pathway from the oxygen-evolving complex in photosystem II substantiated by extensive mutagenesis Biochim. BBA-Bioenergetics 1862 148329.
Tohda R, Tanaka H, Mutoh R, Zhang X, Lee Y, Konuma T, Ikegami T, Migita TC, *Kurisu G(2020) Crystal structure of higher plant heme oxygenase-1 and its mechanism of interaction with ferredoxin. J. Biol. Chem. 296:100217.
Juniar L, Tanaka H, Yoshida K, Hisabori T, *Kurisu G(2020) Structural basis for Thioredoxin isoform-based fine tuning of Ferredoxin-Thioredoxin Reductase activity. Protein Sci.9(12): 2538-2545. <久堀班との共同研究>
Mandal M, Saito K, *Ishikita H(2020) The nature of the short oxygen-oxygen distance in the Mn4CaO6 complex of the photosystem II crystals J. Phys. Chem. Lett. 11 10262-10268.
Saito K, Mandal M, *Ishikita H (2020) Redox potentials along the redox-active low-barrier H-bonds in electron transfer pathways. Phys. Chem. Chem. Phys. 22: 25467-25473.
Sakashita N, Ishikita H, *Saito K (2020) Rigidly hydrogen-bonded water molecules facilitate proton transfer in photosystem II Phys. Chem. Chem. Phys. 22: 15831-15841.
*Saito K, Mitsuhashi K, *Ishikita H (2020) Dependence of the chlorophyll wavelength on the orientation of a charged group: why does the accessory chlorophyll have a low site energy in photosystem II?, J. Photochem. Photobiol. A, 402(1): 112799.
Kojima K, Miyoshi N, Shibukawa A, Chowdhury S, Tsujimura M, Noji T, Ishikita H, Yamanaka A, *Sudo Y, (2020) A green-sensitive, long-lived and step-functional anion channelrhodopsin-2 variant as a high-potential neural silencing tool, J. Phys. Chem. Lett. 11: 6214-6218
Saito K, Mandal M, *Ishikita H (2020) Energetics of ionized water molecules in the H-bond network near the Ca2+ and Cl- binding sites in photosystem II, Biochemistry 59: 3216-3224.
*Saito K, Nakagawa M, *Ishikita H (2020) pKa of the ligand water molecules in the oxygen-evolving Mn4CaO5 cluster in photosystem II, Commun. Chem. 3: 89.
Sakashita N, Ishikita H, *Saito K (2020) Rigidly hydrogen-bonded water molecules facilitate proton transfer in photosystem II. Phys. Chem. Chem. Phys. 22: 15831-15841.
Tamura H, Saito K, *Ishikita H (2020) Acquirement of water-splitting ability and alteration of charge-separation mechanism in photosynthetic reaction centers, Proc. Natl. Acad. Sci. U. S. A. 117: 16373-16382.
Ohnishi Y, Muraki N, Kiyota D, Okumura H, Baba S, Kawano Y, Kumasaka T, Tanaka H, *Kurisu G(2020) X-ray dose-dependent structural changes of the [2Fe-2S] ferredoxin from Chlamydomonas reinhardtii. J Biochem. 167(6): 549-555.
Kojima, K., Ueta, T., Noji, T., Saito, K., Kanehara, K., Yoshizawa, S., Ishikita, H., *Sudo, Y. (2020) Vectorial proton transport mechanism of RxR, a phylogenetically distinct and thermally stable microbial rhodopsin. Sci. Rep. 10: 282. <須藤班との共同研究>
Mandal,M., Kawashima, K., Saito K, *Ishikita, H. (2020) Redox potential of the oxygen-evolving complex in the electron transfer cascade of photosystem II, J. Phys. Chem. Lett, 11: 249-255.
Saito K, *Ishikita H (2019) Mechanism of protonation of the over-reduced Mn4CaO5 cluster in photosystem II Biochim. Biophys. Acta 1860 (Bioenergetics) 1860: 148059.
Charoenwattanasatien, R., Zinzius, K., Scholz, M., Wicke, S., Tanaka, H., Brandenburg, J.S., Marchetti, G.M., Ikegami, T., Matsumoto, T., Oda, T., Sato, M., *Hippler, M., *Kurisu G(2019) Calcium sensing via EF-hand 4 enables thioredoxin activity in the sensor-responder protein calredoxin in the green alga Chlamydomonas reinhardtii. J Biol Chem. 295(1): 170-180.
Sugiura, K., Tanaka, H., Kurisu G., Wakabayashi, K.I., *Hisabori, T. (2019) Multicolor redox sensor proteins can visualize redox changes in various compartments of the living cell. Biochim Biophys Acta Gen Subj. 1863: 1098-1107. <久堀班との共同研究>
Kawashima, K., *Ishikita, H (2018) Energetic insights into two electron transfer pathways in light-driven energy-converting enzymes. Chem. Sci. 9: 4083-4092.
Kawashima K, Takaoka T, Kimura H, Saito K, *Ishikita H (2018) O* evolution and recovery of the wateroxidizing enzyme, Nat. Commun. 9: 1247.
Watanabe H C, Yamashita Y, *Ishikita H (2017) Molecular dynamics simulations do not provide functionally relevant values of redox potential in MtrF, Proc. Natl. Acad. Sci. U. S. A. 114: E10029-E10030.
*Saito K, Suzuki T, Ishikita H (2018) Absorption-energy calculations of chlorophyll a and b with an explicit solvent model, J. Photochem. Photobiol. A 358: 422-431.
Kishi S, Saito K, Kato Y, *Ishikita H (2017) Redox potentials of ubiquinone, menaquinone, phylloquinone, and plastoquinone in aqueous solution, Photosynth. Res. 134: 193-200.
*Watanabe HC, Kubillus M, Kubar T, Stach R, Mizaikoff B, Ishikita H (2017) Cation solvation with quantum chemical effects modeled by size-consistent multi-partitioning quantum mechanics/molecular mechanics method, Phys. Chem. Chem. Phys. 19: 17985-17997.
Ikeda T, Saito K, Hasegawa R, *Ishikita H (2017) Existence of isolated H3O+ in the protein interior, Angew. Chem. Int. Ed. Engl. 56: 9151-9154.
Sakashita N, Watanabe HC, Ikeda T, Saito K, *Ishikita H (2017) Origins of water molecules in the photosystem II crystal structure, Biochemistry 56: 3049-3057.
Hasegawa R., Saito K., Takaoka T., *Ishikita H (2017) pKa of ubiquinone, menaquinone, phylloquinone,plastoquinone, and rhodoquinone in aqueous solution, Photosynth. Res. 133297-304.
Kawashima K, *Ishikita H (2017) Structural factors that alter the redox potential of quinones in cyanobacterial and plant photosystem I, Biochemistry 56: 3019-3028.
河合(久保田)寿子、村木則文、田中秀明、栗栖源嗣 (Kubota-Kawai H, Muraki N, Tanaka H, Kurisu G) ガリウム置換が可能にした光化学系I-フェレドキシン電子伝達複合体の結晶構造解析 (Structural analysis of photosystem I-ferredoxin complex using gallium substituted ferredoxin). 放射光、2018年11月、Vol.31 No.6: 373-380
公募班:桶川 友季
Trinh MDL, Miyazaki D, Ono S, Nomata J, Kono M, Mino H, Niwa T, Okegawa Y, Motohashi K, Taguchi H, Hisabori T, *Masuda S (2021) The evolutionary conserved iron-sulfur protein TCR controls P700 oxidation in photosystem I. iScience 24:102059. <増田班との共同研究><久堀班との共同研究>
Okegawa Y., *Motohashi, K. (2020) M-type thioredoxins regulate the PGR5/PGRL1-dependent pathway by forming a disulfide-linked complex with PGRL1. Plant Cell 30: 3866-3883. 【プレスリリース】
*Okegawa, Y., Basso, L., Shikanai, T., Motohashi, K. (2020) Cyclic electron transport around photosystem I contributes to photosynthetic induction with Thioredoxin f. Plant Physiol. 184: 1291-1302. DOI:10.1104/pp.20.00741 <鹿内班との共同研究>
Sekiguchi T, Yoshida K, Okegawa Y, Motohashi K, Wakabayashi KI, *Hisabori T. (2020) Chloroplast ATP synthase is reduced by both f-type and m-type thioredoxins. BBA-Bioenerg. 1861(11): 148261.<久堀班との共同研究>
公募班:加藤 祐樹
*Kato Y, Watanabe H, *Noguchi T (2021) ATR-FTIR spectroelectrochemical study on the mechanism of the pH dependence of the redox potential of the non-heme iron in photosystem II. Biochemistry. in press.
Kimura, M., *Kato, Y., *Noguchi, T. (2020) Protonation state of a key histidine ligand in the iron-quinone complex of photosystem II as revealed by light-induced ATR-FTIR spectroscopy. Biochemistry 59: 4336-4343.
*Kato, Y., Ohira, A., Nagao, R., *Noguchi, T. (2019) Does the water-oxidizing Mn4CaO5 cluster regulate the redox potential of the primary quinone electron acceptor QA in photosystem II? A study by Fourier transform infrared spectroelectrochemistry. Biochim. Biophys. Acta, Bioenerg. 1860: 148082.
Kishi S, Saito K, *Kato Y, *Ishikita H (2017) Redox potentials of ubiquinone, menaquinone, phylloquinone, and plastoquinone in aqueous solution. Photosynth. Res. 134: 193-200. <栗栖班との共同研究>
著書
*加藤祐樹 (2017) 光化学系IIにおける電子伝達制御機構の解明:分光電気化学法による機能分子の酸化還元電位計測. 化学と工業, 70(10), pp. 935-936.
公募班:河合 寿子(久保田寿子)
Kato, H., Tokutsu, R., Kubota-Kawai, H., Burton-Smith, R., Kim, E., *Minagawa, J. (2020) Characterization of a giant photosystem I supercomplex in the symbiotic dinoflagellate Symbiodiniaceae. Plant Physiology. 183(4): 1725-1734. <皆川班との共同研究>
Kubota-Kawai, H., Burton-Smith, R., Tokutsu, R., Song, C., Akimoto, S., Yokono, M., Ueno, Y., Kim, E., Watanabe, A., Murata, K., *Minagawa, J. (2019) Ten antenna proteins are associated with the core in the supramolecular organization of the photosystem I supercomplex in Chlamydomonas reinhardtii. J. Biol. Chem. 294(12): 4304-4314. <皆川班との共同研究>
Kubota-Kawai, H., Mutoh R, Shinmura K, Sétif P, Nowaczyk M, Rögner M, Ikegami T, Kurisu G, Tanaka H, *Kurisu G (2018) X-ray Structure of an Asymmetrical Trimeric Ferredoxin-Photosystem I Complex. Nat. Plants 4: 218-224. <栗栖班との共同研究>
Ishii, Y., *Maruyama, S., Takahashi, H., Aihara, Y., Yamaguchi, T., Yamaguchi, K., Shigenobu, S., *Kawata, M., Ueno, N., Minagawa J. (2019) Global shifts in gene expression profiles accompanied with environmental changes in cnidarian-dinoflagellate endosymbiosis. G3: Genes, Genomes, Genetics. 9(7): 2337-2347. 【プレスリリース】<皆川班との共同研究>
Ishii, Y., *Maruyama, S., Fujimura-Kamada, K., Kutsuna, N., Takahashi, S., *Kawata, M., Minagawa, J. (2018) Isolation of uracil auxotroph mutants of coral symbiont alga for symbiosis studies. Sci. Rep. 8(1): 3237.【*プレスリリース】<皆川班との共同研究>
著書
Maruyama S., Kim E. Evolution of photosynthetic eukaryotes; current opinion, perplexity and a new perspective. Symbiosis: Cellular, molecular, medical and evolutionary aspects (ed. Kloc M) (2020) 337-351.
公募班:後藤 栄治
Kihara, M., Ushijima, T., Yamagata, Y., Tsuruda, Y., Higa, T., Abiko, T., Kubo, T., Wada, M., Suetsugu, N., *Gotoh, E. Light-Induced Chloroplast Movements in Oryza species. J. Plant. Res. 133(4): 525-535.
Ishishita, K., Higa, T., Tanaka, H., Inoue, S., Chung, A., Ushijima, T., Matsushita, T., Kinoshita, T., Nakai, M., Wada, M., Suetsugu, N., *Gotoh, E. Phototropin 2 contributes to the chloroplast avoidance at the chloroplast-plasma membrane interface. Plant. Physiol. 183(1): 304-316. <松下班との共同研究><中井班との共同研究>
*Gotoh, E., Suetsugu, N., Yamori, W., Ishishita, K., Kiyabu, R., Fukuda, M., Higa, T., Shirouchi, B., Wada, M. (2018) Chloroplast Accumulation Response Enhances Leaf Photosynthesis and Plant Biomass Production. Plant. Physiol. 178(3): 1358-1369.【プレスリリース】<久堀班・矢守研との共同研究>
公募班:高橋 拓子
Takahashi H, Kusama Y, Li X, Takaichi S, *Nishiyama Y. (2019) Overexpression of orange carotenoid protein protects the repair of photosystem II under strong light in Synechocystis sp. PCC 6803. Plant Cell Physiol. 60: 367-375.
Ozawa, S., Bald, T., Onishi, T., Xue H., Matsumura, T., Kubo, R., Takahashi, H., Hippler, M., *Takahashi, Y.(2018) Configuration of ten light-harvesting chlorophyll a/b complex I subunits in photosystem I supercomplex in the green alga Chlamydomonas reinhardtii. Plant Physiol. 178: 583-595. <高橋班との共同研究>
*Tokutsu, R., Fujimura-Kamada, K., Yamasaki, T., Okajima, K., Minagawa, J. (2021) UV-A/B radiation rapidly activates photoprotective mechanisms in Chlamydomonas reinhardtii. Plant Phys. 183: 1894-1902 <皆川班との共同研究>
*Tokutsu R, Fujimura-Kamada K, Matsuo T, Yamasaki T, *Minagawa J. (2019) The CONSTANS flowering complex controls the protective response of photosynthesis in the green alga Chlamydomonas Nat. Commun. 10 4099 <皆川班との共同研究>
*Tokutsu, R., Fujimura-Kamada, K., Yamasaki, T., Matsuo, T., *Minagawa, J. (2019) Isolation of photoprotective signal transduction mutants by systematic bioluminescence screening in Chlamydomonas reinhardtii. Sci Rep. 9: 2820. <皆川班との共同研究>
Aihara, Y., Fujimura-Kamada, K., Yamasaki, T., *Minagawa, J. (2019) Algal photoprotection is regulated by the E3 ligase CUL4-DDB1DET1. Nat Plants. 5: 34-40. <皆川班との共同研究>
公募班:山本 大輔
Charoenwattanasatien R, Tanaka H, Zinzius K, Hochmal AK, Mutoh R, Yamamoto D, Hippler M, *Kurisu G (2018) X-ray crystallographic and high-speed AFM studies of peroxiredoxin 1 from Chlamydomonas reinhardtii. Acta Cryst. F 74: 86-91. <栗栖班との共同研究>
公募班:寺島 一郎
Terashima I, Matsuo M, Suzuki Y, Yamori Y, *Kono M (2021) Photosystem I in low light-grown leaves of Alocasia odora, a shade-tolerant plant, is resistant to fluctuating light-induced photoinhibition. Photosynth. Res. in press. 【プレスリリース】<久堀班・矢守研との共同研究>
Qu Y, Sakoda K, Fukayama H, Kondo E, Suzuki Y, Makino A, Terashima I, *Yamori W (2021) Overexpression of both rubisco and rubisco activase rescues rice photosynthesis and biomass under heat stress. Plant Cell Environ. in press. 【プレスリリース】<久堀班・矢守研との共同研究>
Kimura H, Hashimoto-Sugimoto M, Iba K, Terashima I *Yamori W (2020). Improved stomatal opening enhances photosynthetic rate and biomass production in fluctuating light. Journal of Experimental Botany (in press). 【プレスリリース】<久堀班・矢守研との共同研究>
*Yamori W, Kusumi K, Iba K. Terashima I (2020). Increased stomatal conductance induces rapid changes to photosynthetic rate in response to naturally fluctuating light conditions in rice. Plant Cell Environ. 43: 1230-1240. <久堀班・矢守研との共同研究>
Shimadzu S, Seo M, Terashima I *Yamori W (2019) Whole irradiated plant leaves showed faster photosynthetic induction than individually irradiated leaves via improved stomatal opening. Frontiers in Plant Science 10, 1512.【プレスリリース】<久堀班・矢守研との共同研究>
*Kono M, Kawaguchi H, Mizusawa N, Yamori W, Suzuki Y, Terashima I (2020) Far-Red Light Accelerates Photosynthesis in the Low-Light Phases of Fluctuating Light, Plant and Cell Physiology 61 (1), 192-202.【プレスリリース】<久堀班・矢守研との共同研究>
著書
Adams III WW, Terashima I eds. (2018) The leaf: A platform for performing photosynthesis. Springer.
河野優 (2019)遠赤色光が光合成に与える影響. 光合成研究 85: 125-137.
公募班:松村 浩由
Kajiura, H., Yoshizawa, T., Tokumoto, Y., Suzuki, N., Takeno, S., Takeno, K.J., Yamashita, T., Tanaka, S-i., Kaneko, Y., Fujiyama, K., *Matsumura, H., Nakazawa, Y. (2021) Structure-function studies of ultrahigh molecular weight isoprenes provide key insights into their biosynthesis. Commun. Biol., 4: 215.【プレスリリース】
Fujita J, Sugiyama S, Terakado H, Miyazaki M, Ozawa M, Ueda N, Kuroda N, Tanaka S, Yoshizawa T, Uchihashi T, *Matsumura, H. (2021) Dynamic assembly/disassembly of Staphylococcus aureus FtsZ visualized by high-speed atomic force microscopy. Int. J. Mol. Sci. 22: 1697.
*Matsumura, H., Shiomi, K., Yamamoto, A., Taketani, Y., Kobayashi, N., Yoshizawa, T., Tanaka, S-i., Yoshikawa, H., Endo, M., Fukayama, H. (2020) Hybrid Rubisco with complete replacement of rice Rubisco small subunits by sorghum counterparts confers C4-plant-like high catalytic activity. Mol. Plant, 13: 1570-1581.【プレスリリース】
Yoshizawa, T., Fujita, J., Terakado, H., Ozawa, M., Kuroda, N., Tanaka, S., Uehara, R., *Matsumura, H. (2020) Crystal structures of the cell division protein FtsZ from Klebsiella pneumoniae and Escherichia coli. Acta Cryst. F76: 86-93.
Ferrer-Gonzalez, E., Fujita, J., Yoshizawa, T., Nelson, J.M., Pilch, A.J., Hillman, E., Ozawa, M., Kuroda, N., Al-Tameemi, H.M., Boyd, J.M., Lavoie, E.J., *Matsumura, H., Pilchi, D.S.(2019) Structure-guided design of a fluorescent probe for visualization of FtsZ in clinically important Gram-positive and Gram-negative bacteria pathogens. Sci. Rep., 9: 20092.
【プレスリリース】
Fujita, J., Maeda, Y., Mizohata, E., Inoue, T., Kaul, M., Parhi, A.K., LaVoie, E.J., Pilch, D.S. *Matsumura, H.(2017) Structural flexibility of an inhibitor overcomes drug resistance mutations in Staphylococcus aureus FtsZ ACS Chem. Biol., 12: 1947-1955.【プレスリリース】[京都新聞 (2017/7/11)]
公募班:森垣 憲一
Odagaki SI, *Maekawa S, Hayashi F, Suzaki T, Morigaki K (2020) The effects of phospholipids and fatty acids on the oligomer formation of NAP-22. Neurosci. Lett. 736: 135288.
Yoneda, T., Tanimoto, Y., Takagi, D., *Morigaki, K. "Photosynthetic model membranes of natural plant thylakoid embedded in a patterned polymeric lipid bilayer", Langmuir 36 (21), 5863-5871, (2020).
Kaneshige Y, Hayashi F, Morigaki K, Tanimoto Y, Yamashita H, Fuji M, *Awazu A (2020) Affinity of rhodopsin to raft enables the aligned oligomer formation from dimers: Coarse-grained molecular dynamics simulation of disk membranes. PLoS One 15(2): e0226123.
Tamura F, Tanimoto Y, Nagai R, Hayashi F, *Morigaki K (2019) Self-spreading of phospholipid bilayer in a patterned framework of polymeric bilayer". Langmuir 35: 14696-14703.
*Nomura K, Yamaguchi T, Mori S, Fujikawa K, Nishiyama K, Shimanouchi T, Tanimoto Y, Morigaki K, *Shimamoto K (2019) Alteration of membrane physicochemical properties by two factors for membrane protein integration. Biophys. J. 117: 99-110.
*Hayashi F, Saito N, Tanimoto Y, Okada K, Morigaki K, Seno K, Maekawa S (2019) Raftophilic rhodopsin clusters offer stochastic platforms for G protein signalling in retinal discs. Commun. Biol. 2: 209.
Tanabe M, Ando K, Komatsu R, *Morigaki K (2018) Nanofluidic biosensor created by bonding patterned model cell membrane and silicone elastomer with silica nanoparticles". Small 14: 1802804.
*Morigaki K, Tanimoto Y (2018) Evolution and development of model membranes for physicochemical and functional studies of the membrane lateral heterogeneity. Biochim. Biophys. Acta 1860: 2012-2017.
Kojima, K., Yoshizawa, S., Hasegawa, M., Nakama, M., Kurihara, M., Kikukawa, T., *Sudo, Y. (2020) Lokiarchaeota archaeon Schizorhodopsin-2 (LaSzR2) is an inward proton pump displaying a characteristic feature of acid-induced spectral blue-shift. Sci. Rep. 10: 20857.
Ueta, T., Kojima, K., Hino, T., Shibata, M., Nagano, S., *Sudo, Y. (2020) Applicability of styrene-maleic acid (SMA) copolymer for two microbial rhodopsins, RxR and HsSRI. Biophys. J. 119: 1760-1770.
Kojima, K., Kurihara, R., Sakamoto, M., Takanashi, T., Kuramochi, H., Zhang, X.M., Bito, H., Tahara, T., *Sudo, Y. (2020) Comparative studies of the fluorescence properties of microbial rhodopsins: Spontaneous emission versus photo-intermediate fluorescence. J. Phys. Chem. B 124: 7361-7367.
Kojima, K., Miyoshi, N., Shibukawa, A., Chowdhury, S., Tsujimura, M., Noji, T., Ishikita, H., Yamanaka, A., *Sudo, Y. (2020) Green-sensitive, long-Lived, step-Functional anion channelrhodopsin-2 variant as a high-potential neural silencing tool. J. Phys. Chem. Lett. 11: 6214-6218. 【プレスリリース】
Kojima, K., Ueta, T., Noji, T., Saito, K., Kanehara, K., Yoshizawa, S., Ishikita, H., *Sudo, Y. (2020) Vectorial proton transport mechanism of RxR, a phylogenetically distinct and thermally stable microbial rhodopsin. Sci. Rep. 10: 282. <栗栖班との共同研究>
Shibukawa, A., Kojima, K., Nakajima, Y., Nishimura, Y., Yoshizawa, S., *Sudo, Y. (2019) Photochemical characterization of a new heliorhodopsin from the gram-negative eubacterium Bellilinea caldifistulae (BcHeR) and comparison with heliorhodopsin-48C12. Biochemistry 58: 2934-2943.
Yamanashi, T., Maki, M., Kojima, K., Shibukawa, A., Tsukamoto, T., Chowdhury, S., Yamanaka, A., Takagi, S., *Sudo, Y. (2019) Quantitation of the neural silencing activity of anion channelrhodopsins in Caenorhabditis elegans and their applicability for long-term illumination. Sci. Rep. 9: 7863.
Kojima, K., Watanabe, H.C., Doi, S., Miyoshi, N., Kato, M., *Ishikita, H.,*Sudo, Y. (2018) Mutational analysis of the conserved carboxylates of anion channelrhodopsin-2 (ACR2) expressed in Escherichia coli and their roles in anion transport. Biophys. Physicobiol. 15: 179-188.
Takayama, R., Kaneko, A., Okitsu, T., Tsunoda, S.P., Shimono, K., Mizuno, M., Kojima, K., Tsukamoto, T., Kandori, H., Mizutani, Y., Wada, A., *Sudo, Y. (2018) Production of a light-gated proton channel by replacing the retinal chromophore with its synthetic vinylene derivative. J. Phys. Chem. Lett. 9: 2857-2862.
Inoue, S., Yoshizawa, S., Nakajima, Y., Kojima, K., Tsukamoto, T., Kikukawa, T., *Sudo, Y. (2018) Spectroscopic characteristics of Rubricoccus marinus xenorhodopsin (RmXeR) and a putative model for its inward H+ transport mechanism. Phys. Chem. Chem. Phys. 20: 3172-3183.
公募班:川合 真紀
Tanaka M, Ishikawa Y, Suzuki S, Ogawa T, Taniguchi YY, Miyagi A, Ishikawa T, Yamaguchi M, Munekage YN, *Kawai-Yamada M (2021) Change in expression levels of NAD kinase-encoding genes in Flaveria species. J. Plant Physiol. 265: 153495. <宗景班の共同研究>
Ishikawa Y, Cassan C, Kadeer A, Yuasa K, Sato N, Sonoike S, Kaneko Y, Miyagi A, Takahashi H, Ishikawa T, Yamaguchi M, Nishiyama Y, Hihara Y, Gibon Y, *Kawai-Yamada M (2021) The NAD kinase Slr0400 functions as a growth repressor in Synechocystis sp. PCC 6803. Plant Cell Phys. in press. <皆川班・園池研との共同研究>
*Kawai-Yamada, M., Miyagi, A., Sato, Y., Hosoi, Y., Hashida, S.N., Ishikawa, T., Yamaguchi, M. (2021) Altered metabolism of chloroplastic NAD kinase-overexpressing Arabidopsis in response to magnesium sulfate supplementation. Plant Signal. Behav. , 1844509.
*Kawai-Yamada, M., *Hashida SN (2020) Measurement of chloroplastic NAD kinase activity and whole tissue NAD kinase activity. Bio Protoc. 10(1): e3480.
Ishikawa, Y. and *Kawai-Yamada, M. (2019) Physiological significance of NAD kinases in cyanobacteria. Front. Plant Sci., 10: 847.
*Hashida, S.N., Kawai-Yamada, M. (2019) Inter-organelle NAD metabolism underpinning light responsive NADP dynamics in plants. Front Plant Sci.,10: 960.
*Hashida, S-N., Kawai-Yamada, M. (2019) Detection of disulfides in protein extracts of Arabidopsis thaliana using monobromobimane (mBB). Bio-protocol 9(5).
Ishikawa, Y., Miyagi, A., Ishikawa, T., Nagano, M., Yamaguchi, M., Hihara, Y., Kaneko, Y., *Kawai-Yamada, M. (2019) One of the NAD kinases, sll1415, is required for the glucose metabolism of Synechocystis sp. PCC 6803. Plant J. 98: 654-666.
*Hashida, S., Miyagi, A., Nishiyama, M., Yoshida, K., Hisabori, T., Kawai-Yamada, M. (2018) Ferredoxin/thioredoxin synthesis and degradation system plays an important role in the chloroplastic NADP status of Arabidopsis. Plant Journal 95: 947-960.<久堀班との共同研究>
公募班:泉 正範
Nakamura S, Hagihara S, *Izumi M (2021) Mitophagy in plants. Biochim. Biophys. Acta Gen. Subj. 1865 (8): 129916.
Nakamura S, Hagihara S, Otomo K, Ishida H, Hidema J, Nemoto T, *Izumi M (2021) Autophagy contributes to the quality control of leaf mitochondria. Plant Cell Physiol. 62: 229-247.【プレスリリース】
Nakamura S, *Izumi M (2021) Chlorophagy does not require PLANT U-BOX4-mediated ubiquitination Plant Signal. Behav. 16(3): 1861769.
Kikuchi Y., Nakamura S., Woodson J.D., Ishida H., Ling Q., Hidema J., Jarvis R.P., Hagihara S., *Izumi M (2020) Chloroplast autophagy and ubiquitination combine to manage oxidative damage and starvation responses. Plant Physiol. 183: 1531-1544.【プレスリリース】
*Azai C., Harada J., Fujimoto S., Masuda S., Kosumi D. (2020) Anaerobic energy dissipation by glycosylated carotenoids in the green sulfur bacterium J. Photochem. Photobiol. A 403(1): 112828.
Kojima R., Yamamoto H., Azai C., Uragami C., Hashimoto H., Oh-oka H. (2020) Energy transfer and primary charge separation upon selective femtosecond excitation at 810 nm in the reaction center complex from Heliobacterium modesticaldum. . J. Photochem. Photobiol. A 401(1): 112758. <大岡班との共同研究>
*Oh-oka H., Harada J., Azai C. (2020) Green Bacteria - Energy Transfer and Electron Transport. In "Reference Module in Life Sciences", Elsevier, DOI:10.1016/B978-0-12-819460-7.00031-1 <大岡班との共同研究>
*Teramoto, T., Azai C., Terauchi, K., Yoshimura, M., Ohta, T. (2018) Soft X-ray imaging of cellular carbon and nitrogen distributions in heterocystous cyanobacterium. Plant Physiology 177: 52-61.
*Kondo T, Matsuoka M, Azai C., Kobayashi M, Itoh S, *Oh-oka H (2018) Light-Induced Electron Spin-Polarized (ESP) EPR Signal of the P800+ Menaquinone– Radical Pair State in Oriented Membranes of Heliobacterium modesticaldum: Role/Location of Menaquinone in the Homodimeric Type I Reaction Center. J. Phys. Chem. B 122: 2536-2543. <大岡班との共同研究>
Azai, C., Kobayashi, M., Mizoguchi, T., Tamiaki, H., Terauchi, K., *Tsukatani, Y. (2018) Rapid C8-vinyl reduction of divinyl-chlorophyllide a by BciA from Rhodobacter capsulatus. Journal of Photochemistry and Photobiology A: Chemistry 353: 661-666.
Oyama K, Azai, C., Matsuyama J, *Terauchi K (2018) Phosphorylation at Thr432 induces structural destabilization of the CII ring in the circadian oscillator KaiC. FEBS Lett. 592: 36-45.
公募班:増田 真二
Trinh MDL, Miyazaki D, Ono S, Nomata J, Kono M, Mino H, Niwa T, Okegawa Y., Motohashi K, Taguchi H, Hisabori T, *Masuda S (2021) The evolutionary conserved iron-sulfur protein TCR controls P700 oxidation in photosystem. iScience. 24:102059. <桶川班との共同研究><久堀班との共同研究>
Ito D, Kawamura H, Oikawa A, Ihara Y, Shibata T, Nakamura N, Asano T, Kawabata S, Suzuki T, *Masuda S (2020) ppGpp functions as an alarmone in metazoa. Commun. Biol. 3: 671.
Ono S, Suzuki S, Ito D, Tagawa S, Shiina T, *Masuda S(2020) Plastidial (p)ppGpp synthesis by the Ca2+-dependent Re;A-SpoT homolog regulates the adaptation of chloroplast gene expression to darkness in Arabidopsis. Plant Cell Physiol. 61(12): 2077-2086.【プレスリリース】
*Azai C, Harada J, Fujimoto S, Masuda S, Kosumi D (2020) Anaerobic energy dissipation by glycosylated carotenoids in the green sulfur bacterium Chlorobaculum tepidum. J. Photochem. Photobiol. A 403: 112828.
Inago H, Sato R, *Masuda S (2020) Regulation of light-induced H+ extrusion and uptake by cyanobacterial homologs of the plastidial FLAP1, DLDG1, and Ycf10 in Synechocystis sp. PCC6803. Biochim. Biophys. Acta. 1861(10): 1482582.
Sugimoto Y, *Masuda S (2020) In vivo localization and oligomerization of PixD and PixE for controlling phototaxis in the cyanobacterium Synechocystis sp. PCC6803. J. Gen. Appl. Microbiol. 67(2): 54-58.
Jakob, A., Nakamura, H., Kobayashi, A., Sugimoto, Y., *Wilde, A. and *Masuda S(2020) The (PATAN)-CheY-like response regulator PixE interacts with the motor ATPase PilB1 to control negative phototaxis in the cyanobacterium Synechocystis sp. PCC 6803. Plant Cell Physiol. 61: 296-307.
Harada, K., Arizono, T., Sato, R., Trinh, M.D.L., Hashimoto, A., Kono, M., Tsujii, M., Uozumi, N., Takaichi, S. and *Masuda S (2019) DAY-LENGTH-DEPENDENT DELAYED-GREENING1, the Arabidopsis homolog of the cyanobacterial H+-extrusion protein, is essential for chloroplast pH regulation and optimization of non-photochemical quenching. Plant Cell Physiol. 60: 2660-2671. <魚住班との共同研究>
Nakasone Y, Kikukawa K, Masuda S, *Terazima M (2019) Time-resolved study of interprotein signaling process of a blue light sensor PapB-PapA comlex. J. Phys. Chem. B 123: 3210-3218.
Trinh, MDL., Sato, R., *Masuda S (2019) Genetic characterization of a flap1 null mutation in Arabidopsis npq4 and pgr5 plants suggests that the regulatory role of FLAP1 involves control of proton homeostasis in chloroplasts. Photosynth. Res. 139: 413-424.
Sato, R., Kawashima, R., Trinh, MDL., Nakano, M., Nagai, T., *Masuda S (2019) Significance of PGR5-dependent cyclic electron flow for optimizing the rate of ATP synthesis and consumption in Arabidopsis chloroplasts. Photosynth. Res. 139: 359-365.
*Shimizu T, *Masuda S (2019) Persulphide-responsive transcriptional regulation and metabolism in bacteria. J. Biochem. 167: 125-132.
Shimizu T, Horiguchi K, Hatanaka Y, Masuda S, Shimada K, Matsuura K, *Haruta S (2018) Nitrite-reducing ability is related to growth inhibition by nitrite in Rhodobacter sphaeroides f. sp. denitrificans. Biosci. Biotech. Biochem. 82: 148-151.
Honoki, R., Ono, S., Oikawa, A., Saito, K., *Masuda S (2018) Significance of accumulation of the alarmone (p)ppGpp in chloroplasts for controlling photosynthesis and metabolite balance during nitrogen starvation in Arabidopsis. Photosynth. Res. 135: 299-308.
*Fujisawa T, Masuda S (2018) Light-induced chromophore and protein responses and mechanical signal transduction of BLUF proteins. Biophys. Rev. 10: 327-337.
Kawashima R, Sato R, Harada K, *Masuda S (2017) Relative contributions of PGR5- and NDH-dependent photosystem I cyclic electron flow in the generation of a proton gradient in Arabidopsis chloroplasts. Planta 246: 1045-1050
Sato R, Kono M, Harada K, Ohta H, Takaichi S, *Masuda S (2017) Fluctuating-Light-Acclimation Protein1, conserved in oxygenic phototrophs, regulates H+ homeostasis and non-photochemical quenching in chloroplasts. Plant Cell Physiol. 58: 1622-1630
*H. Oh-oka, J. Harada and C. Azai (2020) Green Bacteria: Energy Transfer and Electron Tranpsort, In Reference Module in Life Sciences. DOI: 10.1016/B978-0-12-819460-7.00031-1 <浅井班との共同研究>
Kojima R, Yamamoto H, Azai C, Uragami C, Hashimoto H, Kosumi D, *H. Oh-oka (2020) Energy transfer and primary charge separation upon selective femtosecond excitation at 810 nm in the reaction center complex from Heliobacterium modesticaldum. J. Photochem. Photobiol. A 401: 112758. DOI: 10.1016/j.jphotochem.2020.112758. <浅井班との共同研究>
*Kondo T, Mutoh R, Tabe H, Kurisu G, H. Oh-oka, Fujiyoshi S, Matsushita M (2020) Cryogenic Single-Molecule Spectroscopy of the Primary Electron Acceptor in Photosynthetic Reaction Center. J. Phys. Chem. Lett. 11: 3980-3986.
Kondo T, Matsuoka M, Azai C, Kobayashi M, Itoh S, *H. Oh-oka (2018) Light-induced electron spin-polarized (ESP) EPR signal of the P800+ menaquinone– radical pair state in oriented membranes of Heliobacterium modesticaldum: Role/location of menaquinone in the homodimeric type I reaction center. J. Phys. Chem. B 122: 2536-2543. <浅井班との共同研究>
*Kawakami K, *Nagao R, Tahara YO, Hamaguchi T, Suzuki T, Dohmae N, Kosumi D, Shen JR, Miyata M, Yonekura K, Kamiya N (2021) Structural implications for a phycobilisome complex from the thermophilic cyanobacterium Thermosynechococcus vulcanus. BBA-Bioenergetics in press. 【プレスリリース】
*Nagao R, Yokono M, Kato KH, Ueno Y, Shen JR, *Akimoto S. (2021) High-light modification of excitation-energy-relaxation processes in the green flagellate Euglena gracilis. Photosynth. Res. in press. 【プレスリリース】<皆川班・秋本研との共同研究>
*Nagao R, Yokono M, Ueno Y, Suzuki T, Kumazawa M, Kato KH, Tsuboshita N, Dohmae N, Ifuku K, Shen JR, *Akimoto S (2021) Enhancement of excitation-energy quenching in fucoxanthin chlorophyll a/c-binding proteins isolated from a diatom Phaeodactylum tricornutum upon excess-light illumination. BBA-Bioenergetics 1862: 148350.【プレスリリース】<皆川班・秋本研との共同研究>
*Nagao R, Yokono M, Ueno Y, Suzuki T, Kato K, Kato KH, Tsuboshita N, Jiang TY, Dohmae N, Shen JR, *Ehira S, *Akimoto S (2021) Molecular organizations and function of iron-stress-induced-A protein family in Anabaena sp. PCC 7120. BBA-Bioenergetics 1862: 148327 (2021).【プレスリリース】<皆川班・秋本研との共同研究>
*Nagao R, Yokono M, Ueno Y, Kato KH, Tsuboshita N, Shen JR, *Akimoto S (2021) Basic pH-induced modification of excitation-energy dynamics in fucoxanthin chlorophyll a/c-binding proteins isolated from a pinguiophyte, Glossomastix chrysoplasta. Biochim. Biophys. Acta, Bioenerg. 1862: 148306.【プレスリリース】<皆川班・秋本研との共同研究>
*Nagao R, Ueno Y, Akimoto S, *Shen JR (2020) Effects of CO2 and temperature on photosynthetic performance in the diatom Chaetoceros gracilis. Photosynth. Res. 146: 189-195. <皆川班・秋本研との共同研究>
Tanabe M, Ueno Y, Yokono M, Shen JR, *Nagao R, *Akimoto S. (2020) Changes in excitation relaxation of diatoms in response to fluctuating light, probed by fluorescence spectroscopies. Photosynth. Res.146: 143-150. <皆川班・秋本研との共同研究>
Oka K, Ueno Y, Yokono M, Shen JR, *Nagao R, *Akimoto, S. (2020) Adaptation of light-harvesting and energy-transfer processes of a diatom Phaeodactylum tricornutum to different light qualities. Photosynth. Res. 146: 227-234. <皆川班・秋本研との共同研究>
*Akimoto S, Ueno Y, Yokono M, Shen JR, *Nagao R (2020) Adaptation of light-harvesting and energy-transfer processes of a diatom Chaetoceros gracilis to different light qualities. Photosynth. Res. 146:87-93. <皆川班・秋本研との共同研究>
*Nagao R, Yokono M, Ueno Y, Shen JR, *Akimoto S (2020) Acidic pH-induced modification of energy transfer in diatom fucoxanthin chlorophyll a/c-binding proteins. J. Phys. Chem. B 124: 4919-4923. <皆川班・秋本研との共同研究>
Nagao R, Kato K, Ifuku K, Suzuki T, Kumazawa M, Uchiyama I, Kashino Y, Dohmae N, Akimoto S, Shen JR, *Miyazaki N, *Akita F (2020) Structural basis for assembly and function of a diatom photosystem I-light-harvesting supercomplex. Nat. Communs. 11: 2481. 【プレスリリース】<皆川班・秋本研との共同研究>
*Akita F, Nagao R, Kato K, Nakajima Y, Yokono M, Ueno Y, Suzuki T, Dohmae N, *Shen JR, *Akimoto S, *Miyazaki N (2020) Structure of a cyanobacterial photosystem I surrounded by octadecameric IsiA antenna proteins. Commun. Biol. 3: 232. <皆川班・秋本研との共同研究>
*Nagao R, Yokono M, Ueno Y, Jiang TY, Shen JR, *Akimoto S (2020) pH-induced regulation of excitation energy transfer in cyanobacterial photosystem I tetramer. J. Phys. Chem. B 124: 1949-1954. <皆川班・秋本研との共同研究>
Kato K, Shinoda T, *Nagao R, Akimoto S, Suzuki T, Dohmae N, Chen M, Allakhverdiev SI, *Shen JR, *Akita F, *Miyazaki N, *Tomo T. (2020) Structural basis for the adaptation and function of chlorophyll f in photosystem I. Nat. Commun. 11: 238. 【プレスリリース】 <皆川班・秋本研との共同研究>
*Kato Y, Ohira A, Nagao R, *Noguchi T (2019) Does the water-oxidizing Mn4CaO5 cluster regulate the redox potential of the primary quinone electron acceptor QA in photosystem II? A study by Fourier transform infrared spectroelectrochemistry. BBA-Bioenergetics 1860: 148082.
Kato K, Nagao R, Jiang TY, Ueno Y, Yokono M, Chan SK, Watanabe M, Ikeuchi M, *Shen JR, *Akimoto S, *Miyazaki N, *Akita F (2019) Structure of a cyanobacterial photosystem I tetramer revealed by cryo-electron microscopy. Nat. Commun. 10: 4929. 【プレスリリース】<皆川班・秋本研との共同研究>
*Nagao R, Ueno Y, Yokono M, Shen JR, *Akimoto S (2019) Effects of excess light energy on excitation-energy dynamics in a pennate diatom Phaeodactylum tricornutum. Photosynth. Res. 141: 355–365. <皆川班・秋本研との共同研究>
Ueno Y, * Nagao R, Shen JR, *Akimoto S (2019) Spectral properties and excitation relaxation of novel fucoxanthin chlorophyll a/c-binding protein complexes. J. Phys. Chem. Lett. 10: 5148–5152. <皆川班・秋本研との共同研究>
Nagao R, Kato K, Suzuki T, Ifuku K, Uchiyama I, Kashino Y, Dohmae N, Akimoto S, *Shen JR, *Miyazaki N, *Akita F (2019) Structural basis for energy harvesting and dissipation in a diatom PSII-FCPII. Nat. Plants 5: 890–901. 【プレスリリース】<皆川班・秋本研との共同研究>
*Nagao R Yokono M, Ueno Y, Shen JR, *Akimoto S (2019) pH-sensing machinery of excitation energy transfer in diatom PSI-FCPI complexes. J. Phys. Chem. Lett. 10: 3531–3535. <皆川班・秋本研との共同研究>
著書
Ifuku, K., & Nagao R (2021). Evolution and Function of the Extrinsic Subunits of Photosystem II. In Photosynthesis: Molecular Approaches to Solar Energy Conversion (pp. 429-446). Springer, Cham.
公募班:椎名 隆
Ono S, Suzuki S, Ito D, Tagawa S, Shiina T, Masuda S (2020) Plastidial (p)ppGpp synthesis by the Ca2+-dependent Re;A-SpoT homolog regulates the adaptation of chloroplast gene expression to darkness in Arabidopsis. Plant Cell Physiol.61: 2077-2086.
Nozoe M, Tsunoyama Y, Ishizaki Y, Nakahira Y, *Shiina T (2020) Selective activation of chloroplast psbD light-responsive promoter and psaA/B promoter in transplastomic tobacco plants overexpressing Arabidopsis sigma factor AtSIG5. Protein Pept. Lett. 20: 1-8.
Suwastika IN, *Cruz AF, Pakawaru NA, Wijayanti W, Muslimin, Basri Z, Ishizaki Y, Tanaka T, Ono N, Kanaya S, Shiina T (2019) Characterization of Bacterial and Fungal Communities in Soils under Different Farming Systems. The Cacao Plantation in Sulawesi Island—Indonesia. Eurasian Soil Sci. 52: 1234-1243.
Kikuchi S, Asakura Y, Imai M, Nakahira Y, Kotani Y, Hashiguchi Y, Nakai Y, Takafuji K, Bédard J, Hirabayashi-Ishioka Y, Mori H, Shiina T, *Nakai M (2018) A Ycf2-FtsHi Heteromeric AAA-ATPase Complex Is Required for Chloroplast Protein Import. Plant Cell 30: 2677-2703. <中井班との共同研究>
Shimmura S, Nozoe M, Kitora S, Kin S, Matsutani S, Ishizaki Y, Nakahira Y, *Shiina T (2017) Comparative analysis of chloroplast psbD promoters in terrestrial plants, Front. in Plant Sci. 8, 1186.
著書
Nomura H, *Shiina T (2020) "Calcium transport systems in chloroplasts and mitochondria of plant cells" in Calcium transport elements in plants, edited by SK Upadhyay, Elsevier (in press)
公募班:田中 寛
Hasegawa H, Tsurumaki T, Imamura S, Sonoike K, *Tanaka K (2021) The Circadian Rhythm Regulator RpaA Modulates Photosynthetic Electron Transport and Alters the Preferable Temperature Range for Growth in a Cyanobacterium. FEBS Lett. 595: 1480-1492. <皆川班・園池研との共同研究>
Shimizu T, Yasuda R, Mukai Y, Tanoue R, Shimada T, Imamura S, Tanaka K, Watanabe S, Masuda T (2020) Proteomic analysis of haem-binding protein from Arabidopsis thaliana and Cyanidioschyzon merolae. Phil. Trans. B. 375: 20190488.
Zhou B, Takahashi S, Takemura T, Tanaka K, *Imamura S (2020) Establishment of a firefly luciferase reporter assay system in the unicellular red alga Cyanidioschyzon merolae. J. Gen. Appl. Microbiol. 67: 42-46.
Pancha I, Chokshi K, Tanaka K, *Imamura S (2020) Microalgal Target of Rapamycin (TOR): A Central Regulatory Hub for Growth, Stress Response and Biomass Production. Plant Cell Physiol. 61: 675-684.
*Yagisawa F, Fujiwara T, Takemura T, Kobayashi Y, Sumiya N, Miyagishima S, Nakamura S, Imoto Y, Misumi O, Tanaka K, Kuroiwa H, Kuroiwa T (2020) ESCRT machinery mediates cytokinetic abscission in the unicellular red alga Cyanidioschyzon merolae. Front. Cell Dev. Biol. 8: 169.
Sakaki K, Ohishi K, Shimizu T, Kobayashi I, Mori N, Matsuda K, Tomita T, Watanabe H, Tanaka K, Kuzuyama T, * Nishiyama M (2020) A suicide enzyme catalyzes multiple reactions for biotin biosynthesis in cyanobacteria. Nature Chem. Biol. 16: 415–422.
Shimizu T, Kacprzak SM, Mochizuki N, Nagatani A, Watanabe S, Shimada T, Tanaka K, Hayashi Y, Arai M, Leister D, Okamoto H, Terry MJ, *Masuda T (2019) The retrograde signaling protein GUN1 regulates tetrapyrrole biosynthesis. Proc. Natl Acad. Sci. U S A 116(49): 24900-24906.
Khorobrykh S, Tsurumaki T, Tanaka K, * Tyystjärvi T, *Tyystjärvi E (2019) Measurement of the redox state of the plastoquinone pool in cyanobacteria. FEBS Lett. 594(2): 367-375.
Hasegawa H, Tsurumaki T, Kobayashi I, Imamura S, *Tanaka K (2019) Identification and analysis of a principal sigma factor interacting protein SinA, essential for growth at high temperatures in a cyanobacterium Synechococcus elongatus PCC 7942. J. Gen. Appl. Microbiol. 66: 66-72.
Takemura T, Imamura S, Kobayashi Y, *Tanaka K (2019) Multiple modification of chromosomal loci using URA5.3 selection marker in the unicellular red alga Cyanidioschyzon merolae. Bio-protocol 9(7): e3204.
Pancha I, Tanaka K, * Imamura S (2019) Overexpression of a glycogenin, CmGLG2, enhances floridean starch accumulation in the red alga Cyanidioschyzon merolae. Plant Signal. Behav. 14(6): 1596718.
*Akanuma G, Tagana T, Sawada M, Suzuki S, Shimada T, Tanaka K, Kawamura K, *Kato-Yamada Y (2019) C-terminal regulatory domain of the ε subunit of FoF1-ATP synthase enhance the ATP-dependent H+ pumping that is involved in the maintenance of cellular membrane potential in Bacillus subtilis. MicrobiologyOpen 8(8): e00815.
Takemura T, Kobayashi Y, Imamura S, *Tanaka K (2019) Top starch plating method for the efficient cultivation of unicellular red alga Cyanidioschyzon merolae. Bio-protocol 9(4): e3172.
Takemura T, *Imamura S, *Tanaka K (2019) Identification of a chloroplast fatty acid exporter protein, CmFAX1, and triacylglycerol accumulation by its overexpression in the unicellular red alga Cyanidioschyzon merolae. Algal Res. 38: 101396.
Pancha I, Shima H, Higashitani N, Igarashi K, Higashitani A, Tanaka K, *Imamura S (2019) Target of rapamycin (TOR) signaling modulates starch accumulation via glycogenin phosphorylation status in the unicellular red alga Cyanidioschyzon merolae. Plant J. 97: 485-499.
Fukuda S, Hirasawa E, Takemura T, Takahashi S, Chokshi K, Pancha I, *Tanaka K, *Imamura S (2018) Accelerated triacylglycerol production without growth inhibition by overexpression of a glycerol-3-phosphate acyltransferase in the unicellular red alga Cyanidioschyzon merolae. Sci. Rep 8: 12410.
Takemura T, Imamura S, Kobayashi Y, *Tanaka K (2018) Construction of a selectable marker recycling system and the use in epitope tagging of multiple nuclear genes in the unicellular red alga Cyanidioschyzon merolae. Plant Cell Physiol. 59: 2308-2316.
*Imamura S, Nomura Y, Takemura T, Pancha I, Taki K, Toguchi K, Tozawa Y, Tanaka K (2018) The checkpoint kinase TOR (target of rapamycin) regulates expression of a nuclear-encoded chloroplast RelA-SpoT homolog (RSH) and modulates chloroplast ribosomal RNA synthesis in a unicellular red alga. Plant J. 94:327-339.
Kobayashi Y, *Tanaka K (2018) Lability in sulfur acidic cultivation medium explains unstable effects of CDK inhibitors on Cyanidioschyzon merolae cell proliferation. J. Gen. Appl. Microbiol. 64: 299-302.
公募班:野口 航
Ozaki H, Tokida T, Nakamura H, Sakai H, Hasegawa T, *Noguchi K (2020) Atmospheric CO2 concentration and N availability affect the balance of the two photosystems in mature Leaves of rice plants grown at a Free-Air CO2 Enrichment site. Front. Plant Sci., 11, 786.
Yamada S, Ozaki H, *Noguchi K (2020) The mitochondrial respiratory chain maintains the photosynthetic electron flow in Arabidopsis thaliana leaves under high-light stress. Plant Cell Physiol., 61: 283-295.
Jiang Z, Watanabe CKA, Miyagi A, Kawai-Yamada M, Terashima I, *Noguchi K (2019) Mitochondrial AOX supports redox balance of photosynthetic electron transport, primary metabolite balance, and growth in Arabidopsis thaliana under high light. Int. J. Mol. Sci., 20: 3067. <寺島班との共同研究><川合班との共同研究>
公募班:松下 智直
Ushijima T, Hanada K, Gotoh E, Yamori W, Kodama Y, Kusano M, Fukushima A, Tokizawa M, Yamamoto Y, Tada Y, Suzuki Y, *Matsushita T (2017) Light controls protein localization through phytochrome-mediated alternative promoter selection. Cell 171: 1316-1325. 【 プレスリリース】<久堀班・矢守研との共同研究><後藤班との共同研究>
著書
*Matsushita T (2019) Regulation of alternative splicing by phytochromes. Methods Mol. Biol. 2026: 143-148.
公募班:中井 正人
Ramundo S, Asakura Y, Salomé PA, Strenkert D, Boone M, Mackinder LCM, Takafuji K, Dinc E, Rahire M, Crèvecoeur M, Magneschi L, Schaad O, Hippler M, Jonikas MC, Merchant S, *Nakai M, *Rochaix JD, *Walter P (2020) Coexpressed subunits of dual genetic origin define a conserved supercomplex mediating essential protein import into chloroplasts. Proc Natl Acad Sci U S A 117(51): 32739-32749. 【プレスリリース】
*Nakai M (2020) Reply: The Revised Model for Chloroplast Protein Import. Plant Cell 32(3): 543-546.
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公募班:曽我 直樹
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公募班:小俣 達男
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公募班:渡辺 麻衣
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