Publications:Other Collaborative Research (medaka etc.)

Request for Acknowledgement:

All works published that include results obtained using the SBI equipment must be acknowledged and a copy of the publication should be sent as paper or pdf to the facility.
Examples for acknowledgement:

We thank Spectrography and Bioimaging facility, NIBB Core Research Facilities for technical support.

If you were supported by the NIBB collaborative research:

・This study was supported by NIBB Individual Collaborative Research Program (NN-NNN*) to AA**.
*: the project number of the NIBB collaborative research project.
**: the initial of the representative of the NIBB collaborative research project.


(43)  Watanabe Y, Okuya K, Takada Y, Kinoshita M, Yokoi S, Chisada S, Kamei Y, Tatsukawa H, Yamamoto N, Abe H, Hashimoto H and Hitomi K. (2020)
Gene disruption of medaka (Oryzias latipes) orthologue for mammalian tissue-type transglutaminase (TG2) causes movement retardation.
J Biochem., 168, 213-222.
(42)  Zeng C W, Sheu J C and Tsai H J. (2020)
The Neuronal Regeneration of Adult Zebrafish After Spinal Cord Injury Is Enhanced by Transplanting Optimized Number of Neural Progenitor Cells.
Cell Transplant. 29, 1-11. 
(41)  Yokoi S, Naruse K, Kamei Y, Ansai S, Kinoshita M, Mito M, Iwasaki S, Inoue S, Okuyama T, Nakagawa S, Young L J and Takeuchi H. (2020)
Sexually dimorphic role of oxytocin in medaka mate choice.
PNAS, 117, 4802-4808. 
(40)  Fujikawa Y, Ishikawa-Fujiwara T, Kuo T, Shinkai N, Shoji T, Kawasaki T, Kamei Y, Sakuraba Y, Sato A, Kinoshita M, Gondo Y, Yuba S, Tsujimura T, Sese J and Todo T. (2020)
Involvement of Rev1 in alkylating agent-induced loss of heterozygosity in Oryzias latipes.
Genes Cells, 25, 124-138. 


(39)  Uchimura T, Hara S, Yazawa T, Kamei Y and Kitano T. (2019)
Involvement of heat shock proteins on the transcriptional regulation of corticotropin-releasing hormone in Medaka.
Frontiers in Endocrinology, 10, 529. 
(38)  Shikata T, Takahashi F, Nishide H, Shigenobu S, Kamei Y, Sakamoto S, Yuasa K, Nishiyama Y, Yamasaki Y and Uchiyama I. (2019)
RNA-seq analysis reveals genes related to photoreception, nutrient uptake, and toxicity in a noxious red-tide raphidophyte Chattonella antiqua.
Frontiers in Microbiology, 10, 1764. 
(37)  Furukawa F, Hamasaki S, Hara S, Uchimura T, Shiraishi E, Osafune N, Takagi H, Yazawa T, Kamei Y and Kitano T. (2019)
Heat shock factor 1 protects germ cell proliferation during early ovarian differentiation in medaka. 
Sci. Rep, 9, 6927. 
(36)  Nakayama T, Shimmura T, Shinomiya A, Okimura K, Takehana Y, Furukawa Y, Shimo T, Senga T, Nakatsukasa M, Nishimura T, Tanaka M, Okubo K, Kamei Y, Naruse K and Yoshimura T. (2019)
Seasonal regulation of the lncRNA LDAIR modulates self-protective behaviours during the breeding season.
Nature Ecology & Evolution, 3, 845-851 Press Release(NIBB)
(35)  Abe E, Yasugi M, Takeuchi H, Watanabe E, Kamei Y and Yamamoto H. (2019)
Development of omnidirectional aerial display with aerial imaging by retro-reflection (AIRR) for behavioral biology experiments.
Optical Review26, 221–229.


(34)  Tonoyama Y, Shinya M, Toyoda A, Kitano T, Oga A, Nishimaki T, Katsumura T, Oota H, Wan M T, Yip B W P, Helen M O L, Chisada S, Deguchi T, Au D W T, Naruse K, Kamei Y and Taniguchi Y. (2018)
Abnormal nuclear morphology is independent of longevity in a zmpste24-deficient fish model of Hutchinson-Gilford progeria syndrome (HGPS).
Comp Biochem Physiol C Toxicol Pharmacol, 209, 54-62.
(33)  Watanabe Y, Furukawa E, Tatsukawa H, Hashimoto H, Kamei Y, Taniguchi Y and Hitomi K. (2018)
Higher susceptibility to osmolality of the medaka (Oryzias latipes) mutants in orthologue genes of mammalian skin transglutaminases.
Biosci Biotechnol Biochem. 82, 1165-1168.
(32)  Nagao Y, Takada H, Miyadai M, Adachi T, Seki R, Kamei Y, Hara I, Taniguchi Y, Naruse K, Hibi M, Kelsh R N and Hashimoto H. (2018)
Distinct interactions of Sox5 and Sox10 in fate specification of pigment cells in medaka and zebrafish.
PLoS Genetics, 4, e1007260.
(31)  Kamijo M, Kawamura M and Fukamachi S. (2018)
Loss of red opsin genes relaxes sexual isolation between skin-colour variants of medaka.
Behav. Processes, 12, 150:25-28.


(30)  Horimizu R, Ogawa R, Watanabe Y, Tatsukawa H, Kinoshita M, Hashimoto H and Hitomi K. (2017)
Biochemical characterization of a medaka (Oryzias latipes) orthologue for mammalian Factor XIII and establishment of a gene-edited mutant.
FEBS J. 284, 2843-2855.
(29)  Ishikawa T, Kashima M, Nagano A J, Ishikawa-Fujiwara T, Kamei Y, Todo T and Mori K. (2017)
Unfolded protein response transducer IRE1-mediated signaling independent of XBP1 mRNA splicing is not required for growth and development of medaka fish.
eLife, 6, e26845. 
(28)  Shimmura T, Nakayama T, Shinomiya A, Fukamachi S, Yasugi M, Watanabe E, Shimo T, Senga T, Nishimura T, Tanaka M, Kamei Y, Naruse K & Yoshimura T. (2017)
Dynamic plasticity in phototransduction regulates seasonal changes in color perception.
Nat. Commun., 8412. Press Release(NIBB)
(27)  Nakamoto M, Shibata Y, Ohno K. Usami T, Kamei Y, Taniguchi Y, Todo T, Sakamoto T, Young G, Swanson P, Naruse K and Nagahama Y. (2017)
Ovarian aromatase loss-of-function mutant medaka undergo ovary degeneration and partial female-to-male sex reversal after puberty.
Mol. Cell. Endocrinol., 460, 104-122.
(26)  Takeuchi M, Inoue C, Goshima A, Nagao Y, Shimizu K, Miyamoto H, Shimizu T, Hashimoto H, Yonemura S, Kawahara A, Hirata Y, Yoshida M and Hibi M. (2017)
Medaka and zebrafish contactin1 mutants as a model for understanding neural circuits for motor coordination.
Genes Cells. 22, 723-741.
(25)  Ishikawa T, Toyama T, Nakamura Y, Tamada K, Shimizu H, Ninagawa S, Okada T, Kamei Y, Ishikawa-Fujiwara T, Todo T, Aoyama E, Takigawa M, Harada A and Mori K. (2017)
UPR transducer BBF2H7 allows export of type II collagen in a cargo- and developmental stage-specific manner.
J. Cell Biol., jcb. 201609100. 
(24)  Nakayasu T, Yasugi M, Shiraishi S, Uchida S and Watanabe E. (2017)
Three-dimensional computer graphic animations for studying social approach behaviour in medaka fish: Effects of systematic manipulation of morphological and motion cues.
PLoS One12, e0175059. 
(23)  Takada Y, Watanabe Y, Okuya K, Tatsukawa H, Hashimoto H and Hitomi K. (2017)
Biochemical characterization of the medaka (Oryzias latipes) orthologue for mammalian tissue-type transglutaminase (TG2).
Biosci. Biotechnol. Biochem. 81, 469-474.


(22)  Yokoi S, Ansai S, Kinoshita M, Naruse K, Kamei Y, Young L J, Okuyama T and Takeuchi H. (2016)
Mate-guarding behavior enhances male reproductive success via familiarization with mating partners in medaka fish.
Front Zool.13, 21. 


(21)  Kikuta A, Furukawa E, Ogawa R, Suganuma N, Saitoh M, Nishimaki T, Katsumura T, Oota H, Kawamoto T, Tatsukawa H, Hashimoto H and Hitomi K. (2015)
Biochemical characterization of medaka (Oryzias latipes) transglutaminases, OlTGK1 and OlTGK2, as orthologues of human keratinocyte-type transglutaminase.
PLoS One, 10(12) :e0144194. 
(20)  Yokoi S, Okuyama T, Kamei Y, Naruse K, Taniguchi Y, Ansai S, Kinoshita M, Young L J, Takemori N, Kubo T and Takeuchi H. (2015)
An essential role of the arginine vasotocin system in mate-guarding behaviors in triadic relationships of Medaka fish.(Oryzias latipes)
PLoS Genetics, 11, e1005009. 


(19)  Murozumi N, Nakashima R, Hirai T, Kamei Y, Ishikawa-Fujiwara T, Todo T and Kitano T. (2014)
Loss of follicle-stimulating hormone receptor function causes masculinization and suppression of ovarian development in genetically female medaka.
Endocrinology, 155, 3136-3145.
(18)  Kimura T, Nagao Y, Hashimoto H, Yamamoto-Shiraishi Y I, Yamamoto S, Yabe T, Takada S, Kinoshita M, Kuroiwa A and Naruse K. (2014)
Leucophores are similar to xanthophores in their specification and differentiation processes in medaka.
PNAS. 111, 20, 7343-7348. 
(17)  Nagao Y, Suzuki T, Shimizu A, Kimura T, Seki R, Adachi T, Inoue C, Omae Y, Kamei Y, Hara I, Taniguchi Y, Naruse K, Wakamatsu Y, Kelsh R N, Hibi M and Hashimoto H. (2014)
Sox5 functions as a fate switch in medaka pigment cell development.
PLoS Genet., 10, 4, e1004246. 
(16)  Yamamoto K, Suzuki T, Aihara Y, Haga K, Sakai T and Nagatani A. (2014)
The phototropic response is locally regulated within the topmost light-responsive region of the Arabidopsis thaliana seedling.
Plant Cell Physiol. 55(3), 497–506.
(15)  Ogino Y, Hirakawa I, Inohaya K, Sumiya E, Miyagawa S, Denslow N, Yamada G, Tatarazako N and Iguchi T. (2014)
Bmp7 and Lef1 are the downstream effectors of androgen signaling in androgen-induced sex characteristics development in medaka.
Endocrinology, 155(2), 449-462. Press Release(NIBB)


(14)  Miura K and Furumoto T. (2013)
Cold signaling and cold response in plants.
Int. J. Mol. Sci. 14, 5312-5337.
(13)  Ochiai T, Suehiro Y, Nishinari K, Kubo T and Takeuchi H. (2013)
A new data-mining method to search for behavioral properties that induce alignment and their involvement in social learning in medaka fish (Oryzias latipes).
PLoS ONE6, 8(9), e71685. 
(12)  Ansai S, Sakuma T, Yamamoto T, Ariga H, Uemura N, Takahashi R and Kinoshita M. (2013)
Efficient targeted mutagenesis in medaka using custom-designed transcription activator-like effector nucleases.
Genetics, 193, 739-749.
(11)  Matsui H, Sato F, Sato S, Koike M, Taruno Y, Saiki S, Funayama M, Ito H, Taniguchi Y, Uemura N, Toyoda A, Sakaki Y, Takeda S, Uchiyama Y, Hattori N and Takahashi R. (2013)
ATP13A2 deficiency induces a decrease in cathepsin D activity, fingerprint-like inclusion body formation, and selective degeneration of dopaminergic neurons.
FEBS Letters587, 1316-1325.
(10)  Matsuzaki Y, Hosokai H, Mizuguchi Y, Fukamachi S, Shimizu A and Saya H. (2013)
Establishment of HRASG12V transgenic medaka as a stable tumor model for in vivo screening of anticancer drugs.
PLoS ONE8(1), e54424.
(9)  Naoe H, Chiyoda T, Ishizawa J, Masuda K, Saya H and Kuninaka S. (2013)
The APC/C activator Cdh1 regulates the G2/M transition during differentiation of placental trophoblast stem cells.
BBRC, 430, 757-762.
(8)  Oishi T, Terai S, Kuwashiro S, Fujisawa K, Matsumoto T, Nishina H and Sakaida I. (2012)
Ezetimibe reduces fatty acid quantity in liver and decreased inflammatory cell infiltration and improved NASH in medaka model.
BBRC, 422, 22-27.
(7)  Ishikawa T, Okada T, Ishikawa-Fujiwara T, Todo T, Kamei Y, Shigenobu S, Tanaka M, Saito T L, Yoshimura J, Morishita S, Toyoda A, Sakaki Y, Taniguchi Y, Takeda S and Mori K.  (2013)
ATF6α/β-mediated adjustment of ER chaperone levels is essential for development of the notochord in medaka fish.
Mol. Biol. Cell., 
24, 1387-1395. 

This paper was selected as a cover art.

【Before 2012】

(6)  Ansai S, Ochiai H, Kanie Y, Kamei Y, Gou Y, Kitano T, Yamamoto T and Kinoshita M. (2012)
Targeted disruption of exogenous EGFP gene in medaka using zinc-finger nucleases.
Dev. Growth Differ.54. 546-556. 
(5)  Yasuda T, Oda S, Li Z, Kimori Y, Kamei Y, Ishikawa T, Todo T and Mitani H. (2012)
Gamma-ray irradiation promotes premature meiosis of spontaneously differentiating testis-ova in the testis of p53-deficient medaka (Oryzias latipes).
Cell Death Dis.3, e395. 
(4)  Shimizu A and Shimizu N. (2013)
Dual promoter expression system with insulator ensures a stringent tissue-specific regulation of two reporter genes in the transgenic fish.
Transgenic Res. 22, 435-444.
(3)  Kitano T, Hayashi Y, Shiraishi E and Kamei Y. (2012)
Estrogen rescues masculinization of genetically female medaka by exposure to cortisol or high temperature.
Mol Reprod Dev. 79,719-726.

This paper was selected as a cover art.
(2)  Tokumoto T. (2012)
Identification of membrane progestin receptors (mPR) in goldfish oocytes as a key mediator of steroid non-genomic action.
Steroids. 77(10):1013-1016.
(1)  Chisada S, Okamoto H, Taniguchi Y, Kimori Y, Toyoda A, Sakaki Y, Takeda S and Yoshiura Y. (2011)
Myostatin-deficient medaka exhibit a double-muscling phenotype with hyperplasia and hypertrophy, which occur sequentially during post-hatch development.
Dev Biol.


(2)  Shinya M. (2016)
Construction of the inbred strain
Koich Kawakami et al. (eds.), Zebrafish: Methods and Protocols, Methods in Molecular Biology, vol. 1451. 
(1)  Tokumoto T. (2013)
Membrane progestin receptor, a key mediator of final oocyte maturation in fish.
Sexual Plasticity and Gametogenesis in Fishes (B. Senthilkumaran ed) published by NOVA Science Publishers Inc., USA, 423-440.