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National Institutes of Natural Sciences

National Institute for Basic Biology

NIBB Departments

Researcher Infomation

JOHZUKA, Katsuki
Assistant Professor
JOHZUKA, Katsuki
Affiliation:

Research Summary

Chromosome condensation is a basic cellular process that ensures the faithful segregation of chromosomes in both mitosis and meiosis. This process is required not only for decreasing chromosome arm length, but also for resolving entanglements between sister-chromatids that are created during DNA replication. Any abnormality in this process leads to segregation errors or aneuploidy, which results in cell death. Chromosome condensation is mainly achieved by condensin, a hetero-pentameric protein complex, widely conserved across a variety of organisms ranging from yeast to humans. Despite its conservation and importance in chromosome dynamics, it is not fully understood how condensin works. Recent studies have revealed that condensin functions are not restricted to chromosome condensation and segregation during cell divisions, and is required for diverse DNA metabolism such as genome stability, transcriptional regulation, and cell differentiation.
 
Our aim is to understand the mechanism and regulation of chromosome condensation. To this end, we have been studying the role of condensin in the budding yeast Saccharomyces cerevisiae. Microscopic observation has indicated the nucleolar localization of condensin. Consistent with this, the ribosomal RNA gene (rDNA) repeat is the most condensed region in the genome during mitosis. We have found that condensin specifically binds to the RFB site located within the rDNA repeat. To date, the best characterized condensin binding region is the rDNA repeat on the right arm of chromosome XII in budding yeast. We further discovered the multiple protein network required to recruit condensin to the RFB site.
 

I. Dynamic relocalization of condensin during meiosis

Our genetic screening indicated that two proteins, Csm1 and Lrs4, were required for condensin recruitment to the RFB site. Physical interactions between Csm1/Lrs4 and subunits of condensin are important for the recruitment of condensin to the RFB site. These proteins are known as components of the monopolin complex required for faithful segregation of homologous chromosomes during meiotic division I. During meiosis I, the monopolin complex re-localizes from rDNA repeat to the centromere and acts to ensure sister-chromatid co-orientation. Re-localization of Csm1/Lrs4 proteins suggested that re-localization of con- densin from rDNA repeat to centromere had occurred. As expected, chromatin-IP experiments indicated that condensin re-localizes to the centromere during meiosis I. Condensin might clamp sister-chromatids together during meiosis I.
 

II. Condensin-dependent chromatin folding

The RFB site, which consists of a ~150bp DNA sequence, functions as a cis-element for the recruitment of condensing to chromatin in the yeast genome. If the RFB site is inserted into an ectopic chromosomal locus, condensin can associate with the ectopic RFB site. To explore the role of condensin in chromosome organization, we have constructed a strain   in which two RFB sites are inserted into an ectopic chromosome arm with an interval of 15kb distance in the cell with a complete deletion of chromosomal rDNA repeat. Using this strain, condensin-dependent chromatin interaction between two RFBs was examined by chromosome conformation capture (3C) assay. We discovered the condensin-dependent chromatin interaction between the two RFB sites on the chromosome arm. This result indicates that condensin plays a role in chromatin interaction between condensin binding sites, and this interaction leads to the creation of a chromatin loop between those sites (Figure 1). It is thought that condensin-dependent chromatin folding is one of the basic molecular processes of chromosome condensation. During the cell cycle stages, the RFB - RFB interaction signal increases in metaphase and reaches its maximum level in anaphase. In addition to the RFB - RFB interaction, the chromatin interactions between the internal regions of the two RFBs increases in anaphase. Thus, the configuration of chromatin fiber changes from a simple loop into a complicated twisted shape as the cell cycle progresses from metaphase to anaphase.
 

2018_johzuka_en_fig1.jpg

Figure 1. A Schematic model of chromosome condensation. Condensin makes chromatin interactions between adjacent binding sites (RFB, for example). This leads to a folding of chromatin fibers between the sites, as a basic process of chromosome condensation.

Reports

Selected Publications

Johzuka, K., Horiuchi, T. (2009). The cis element and factors required for condensin recruitment to chromosomes. Mol. Cell 34, 26–35.
 
Johzuka, K., Horiuchi, T. (2007). RNA polymerase I transcription obstructs condensin association with 35S rRNA coding region and can cause contraction of long repeat in Saccharomyces cerevisiae. Genes Cells 12, 759–771.
 
Johzuka, K., Terasawa, M., Ogawa, H., Ogawa, T., and Horiuchi, T. (2006). Condensin loaded onto the replication fork barrier site in the rRNA gene repeats during S phase in a FOB1-dependent fashion to prevent contraction of a long repetitive array in Saccharomyces cerevisiae. Mol. Cell. Biol. 26, 2226–2236.
 
Johzuka, K., Horiuchi, T. (2002). Replication fork block protein, Fob1, acts as an rDNA region specific recombinator in S. cerevisiae. Genes Cells 7, 99–113.

Contact

Assistant Professor JOHZUKA, Katuski TEL: +81 564 55 7692 E-mail: kjozuka@nibb.ac.jp