細胞動態研究部門（上田研）

 
Romani, F., Banić, E., Florent, S.N., Kanazawa, T., Goodger, J.Q.D., Mentink, R.A., Dierschke, T., Zachgo, S., Ueda, T., Bowman, J.L., Tsiantis, M., and Moreno, J.E. (2020). Oil Body Formation in Marchantia polymorpha Is Controlled by MpC1HDZ and Serves as a Defense against Arthropod Herbivores. Current Biology 30, 2815-2828.e8.
doi:10.1016/j.cub.2020.05.081
利用機器：植物栽培室
 
Kanazawa, T., Morinaka, H., Ebine, K., Shimada, T.L., Ishida, S., Minamino, N., Yamaguchi, K., Shigenobu, S., Kohchi, T., Nakano, A., et al. (2020). The liverwort oil body is formed by redirection of the secretory pathway. Nat. Commun. 11, 1–11.
doi:10.1038/s41467-020-19978-1
利用機器：植物栽培室
 
Lupanga, U., Röhrich, R., Askani, J., Hilmer, S., Kiefer, C., Krebs, M., Kanazawa, T., Ueda, T., and Schumacher, K. (2020). The arabidopsis v-atpase is localized to the tgn/ee via a seed plant-specific motif. Elife 9.
doi:10.7554/eLife.60568
利用機器：植物栽培室
 
Fujimoto, M., Ebine, K., Nishimura, K., Tsutsumi, N., and Ueda, T. (2020). Longin R-SNARE is retrieved from the plasma membrane by ANTH domain-containing proteins in Arabidopsis. Proc. Natl. Acad. Sci. U. S. A. 117, 25150–25158.
doi:10.1073/pnas.2011152117
利用機器：植物栽培室
 

生物進化研究部門（長谷部研）

 
Hashida, Y., Takechi, K., Abiru, T., Yabe, N., Nagase, H., Hattori, K., Takio, S., Sato, Y., Hasebe, M., Tsukaya, H., and Takano, H. (2020). Two ANGUSTIFOLIA genes regulate gametophore and sporophyte development in Physcomitrella patens. Plant Journal 101, 1318–1330.
doi:10.1111/tpj.14592
利用機器：インキュベーター
 
Palfalvi, G., Hackl, T., Terhoeven, N., Shibata, T.F., Nishiyama, T., Ankenbrand, M., Becker, D., Förster, F., Freund, M., Iosip, A., Kreuzer, I., Saul, F., Kamida, C., Fukushima, K., Shigenobu, S., Tamada, Y., Adamec, L., Hoshi, Y., Ueda, K., Winkelmann, T., Fuchs, J., Schubert, I., Schwacke, R., Al-Rasheid, K., Schultz, J., Hasebe, M., and Hedrich, R. (2020). Genomes of the Venus Flytrap and Close Relatives Unveil the Roots of Plant Carnivory. Current Biology 30, 2312-2320.e5.
doi:10.1016/j.cub.2020.04.051
利用機器：植物栽培室、インキュベーター、プレハブ恒温室
 
Kumar, M., Quan, X., Awatsuji, Y., Cheng, C., Hasebe, M., Tamada, Y., and Matoba, O. (2020). Common-path multimodal three-dimensional fluorescence and phase imaging system. Journal of Biomedical Optics 25, 1.
doi: 10.1117/1.JBO.25.3.032010
利用機器：インキュベーター
 

植物発生生理研究室（ExCELLS川出研） 

 
Tomoi, T., Kawade, K., Kitagawa, M., Sakata, Y., Tsukaya, H., and Fujita, T. (2020). Quantitative Imaging Reveals Distinct Contributions of SnRK2 and ABI3 in Plasmodesmatal Permeability in Physcomitrella patens. Plant & Cell Physiology 61, 942–956.
 doi: 10.1093/pcp/pcaa021
利用機器：インキュベーター
 
Nozaki, M., Kawade, K., Horiguchi, G., and Tsukaya, H. (2020). An3-Mediated Compensation Is Dependent on a Cell-Autonomous Mechanism in Leaf Epidermal Tissue. Plant Cell Physiol. 61, 1181–1190.
doi: 10.1093/pcp/pcaa048
利用機器：インキュベーター
 
Kawade, K., Horiguchi, G., Hirose, Y., Oikawa, A., Hirai, M.Y., Saito, K., Fujita, T., and Tsukaya, H. (2020). Metabolic Control of Gametophore Shoot Formation through Arginine in the Moss Physcomitrium patens. Cell Rep. 32, 108127.
doi: 10.1016/j.celrep.2020.108127
利用機器：インキュベーター
 

進化発生研究部門（新美研）

 
Chikami, Y., Kawaguchi, H., Suzuki, T., Yoshioka, H., Sato, Y., Yaginuma, T., and Niimi, T. (2020). Oral RNAi of diap1 results in rapid reduction of damage to potatoes in Henosepilachna vigintioctopunctata. Journal of Pest Science.
doi: 10.1007/s10340-020-01276-w
利用機器：インキュベーター、圃場
 

環境光生物学研究部門（皆川研）

 
Kishimoto, M., Baird, A.H., Maruyama, S., Minagawa, J., and Takahashi, S. (2020). Loss of symbiont infectivity following thermal stress can be a factor limiting recovery from bleaching in cnidarians. ISME J. 14, 3149–3152.
10.1038/s41396-020-00742-8
利用機器：インキュベーター
 

形態形成研究部門（上野研）

 
Sakai, Y., Kato, K., Koyama, H., Kuba, A., Takahashi, H., Fujimori, T., Hatta, M., Negri, A.P., Baird, A.H., and Ueno, N. (2020). A step-down photophobic response in coral larvae: implications for the light-dependent distribution of the common reef coral, Acropora tenuis. Sci. Rep. 10, 1–11.
10.1038/s41598-020-74649-x
利用機器：インキュベーター
 

 

多様性生物学研究室（星野G）

 
Hoshino, A., Mizuno, T., Shimizu, K., Mori, S., Fukada-Tanaka, S., Furukawa, K., Ishiguro, K., Tanaka, Y., and Iida, S. (2019). Generation of yellow flowers of the japanese morning glory by engineering its flavonoid biosynthetic pathway toward aurones. Plant and Cell Physiology 60, 1871-1879.
doi: 10.1093/pcp/pcz101
利用機器：植物栽培室、インキュベーター、屋外温室
 

共生システム研究部門（川口研）

 
Liu, M., Soyano, T., Yano, K., Hayashi, M., and Kawaguchi, M. (2019). ERN1 and CYCLOPS coordinately activate NIN signaling to promote infection thread formation in Lotus japonicus. Journal of Plant Research 132, 641-653.
doi: 10.1007/s10265-019-01122-w
利用機器：植物栽培室、屋外温室
 
Soyano, T., Shimoda, Y., Kawaguchi, M., and Hayashi, M. (2019). A shared gene drives lateral root development and root nodule symbiosis pathways in Lotus. Science 366, 1021-1023.
doi: 10.1126/science.aax2153
利用機器：植物栽培室、屋外温室
 
Tokumoto, Y., Hashimoto, K., Soyano, T., Aoki, S., Iwasaki, W., Fukuhara, M., Nakagawa, T., Saeki, K., Yokoyama, J., Fujita, H., and Kawaguchi, M. (2020). Assessment of Polygala paniculata (Polygalaceae) characteristics for evolutionary studies of legume–rhizobia symbiosis. Journal of Plant Research 133, 109-122.
doi: 10.1007/s10265-019-01159-x
利用機器：植物栽培室、プロイディアナライザー、屋外温室
 

細胞動態研究部門（上田研）

 
Shimada, T.L., Shimada, T., Okazaki, Y., Higashi, Y., Saito, K., Kuwata, K., Oyama, K., Kato, M., Ueda, H., Nakano, A., Ueda, T., Takano, Y., and Hara-Nishimura, I. (2019). HIGH STEROL ESTER 1 is a key factor in plant sterol homeostasis. Nature Plants 5, 1154-1166.
doi: 10.1038/s41477-019-0537-2
利用機器：植物栽培室
 
D'Ippolito, R.A., Minamino, N., Rivera-Casas, C., Cheema, M.S., Bai, D.L., Kasinsky, H.E., Shabanowitz, J., Eirin-Lopez, J.M., Ueda, T., Hunt, D.F., and Ausió, J. (2019). Protamines from liverwort are produced by post-translational cleavage and C-terminal di-aminopropanelation of several male germ-specific H1 histones. Journal of Biological Chemistry 294, 16364-16373.
doi: 10.1074/jbc.RA119.010316
利用機器：植物栽培室
 
Norizuki, T., Kanazawa, T., Minamino, N., Tsukaya, H., and Ueda, T. (2019). Marchantia polymorpha, a new model plant for autophagy studies. Frontiers in Plant Science 10, 935.
doi: 10.3389/fpls.2019.00935
利用機器：植物栽培室
 
Shimada, T.L., Betsuyaku, S., Inada, N., Ebine, K., Fujimoto, M., Uemura, T., Takano, Y., Fukuda, H., Nakano, A., and Ueda, T. (2019). Enrichment of phosphatidylinositol 4,5-bisphosphate in the extra-invasive hyphal membrane promotes colletotrichum infection of Arabidopsis thaliana. Plant and Cell Physiology 60, 1514-1524.
doi: 10.1093/pcp/pcz058
利用機器：植物栽培室
 

多様性生物学研究室（栂根G）

 
Chiou, W.-Y., Kawamoto, T., Himi, E., Rikiishi, K., Sugimoto, M., Hayashi-Tsugane, M., Tsugane, K., and Maekawa, M. (2019). LARGE GRAIN Encodes a putative RNA-binding protein that regulates spikelet hull length in rice. Plant and Cell Physiology 60, 503-515.
doi: 10.1093/pcp/pcz014
利用機器：植物栽培室、インキュベーター、LED培養棚、プロイディアナライザー
 
Nishimura, H., Himi, E., Eun, C.-H., Takahashi, H., Qian, Q., Tsugane, K., and Maekawa, M. (2019). Transgenerational activation of an autonomous DNA transposon, Dart1-24, by 5-azaC treatment in rice. Theoretical and Applied Genetics 132, 3347-3355.
doi: 10.1007/s00122-019-03429-7
利用機器：植物栽培室、プレハブ恒温室
 
Nishimura, H., Himi, E., Rikiishi, K., Tsugane, K., and Maekawa, M. (2019). Establishment of ndart1-tagged lines of koshihikari, an elite variety of rice in japan. Breeding Science 69, 696–701.
doi: 10.1270/jsbbs.19049
利用機器：植物栽培室
 

生物進化研究部門（長谷部研）

 
 
Sasaki, T., Tsutsumi, M., Otomo, K., Murata, T., Yagi, N., Nakamura, M., Nemoto, T., Hasebe, M., and Oda, Y. (2019). A Novel Katanin-Tethering Machinery Accelerates Cytokinesis. Current Biology 29, 4060-4070.
doi: 10.1016/j.cub.2019.09.049
利用機器：インキュベーター
 
Ishikawa, M., Morishita, M., Higuchi, Y., Ichikawa, S., Ishikawa, T., Nishiyama, T., Kabeya, Y., Hiwatashi, Y., Kurata, T., Kubo, M., Shigenobu, S., Tamada, Y., Sato, Y., and Hasebe, M. (2019). Physcomitrella STEMIN transcription factor induces stem cell formation with epigenetic reprogramming. Nature Plants 5, 681-690.
doi: 10.1038/s41477-019-0464-2
利用機器：植物栽培室、インキュベーター、プレハブ恒温室
 
Kubo, M., Nishiyama, T., Tamada, Y., Sano, R., Ishikawa, M., Murata, T., Imai, A., Lang, D., Demura, T., Reski, R., and Hasebe, M. (2019). Single-cell transcriptome analysis of Physcomitrella leaf cells during reprogramming using microcapillary manipulation. Nucleic Acids Research 47, 4539-4553.
doi: 10.1093/nar/gkz181
利用機器：植物栽培室、インキュベーター、プレハブ恒温室
 
Kakishima, S., Liang, Y.-S., Ito, T., Yang, T.-Y.A., Lu, P.-L., Okuyama, Y., Hasebe, M., Murata, J., and Yoshimura, J. (2019). Evolutionary origin of a periodical mass-flowering plant. Ecology and Evolution 9, 4373-4381.
doi: 10.1002/ece3.4881
利用機器：植物栽培室、屋外温室
 

進化発生研究部門（新美研）

 
Sakai, H., Oshima, H., Yuri, K., Gotoh, H., Daimon, T., Yaginuma, T., Sahara, K., and Niimi, T. (2019). Dimorphic sperm formation by Sex-lethal. Proceedings of the National Academy of Sciences of the United States of America 116, 10412–10417.
doi:10.1073/pnas.1820101116
利用機器：圃場
 
Morita, S., Ando, T., Maeno, A., Mizutani, T., Mase, M., Shigenobu, S., and Niimi, T. (2019). Precise staging of beetle horn formation in Trypoxylus dichotomus reveals the pleiotropic roles of doublesex depending on the spatiotemporal developmental contexts. PLoS Genetics 15, 1–25.
doi:10.1371/journal.pgen.1008063
利用機器：圃場、タイムラプス観察システム
 

光学解析室（亀井研）

 
Matsuo, M., Yoriko Ando, Y., Kamei, Y. and Fukamachi, S. (2018). A semi-automatic and quantitative method to evaluate behavioral photosensitivity in animals based on the optomotor response (OMR). Biology Open (in press)
利用機器：ハイパースペクトルカメラ
 

植物器官形成学（旧岡田清孝所長研究室）

 
Nakata, M.T., Tameshige, T., Takahara, M., Mitsuda, N., and Okada, K. (2018)
The functional balance between the WUSCHEL-RELATED HOMEOBOX1 gene and the phytohormone auxin is a key factor for cell proliferation in Arabidopsis seedlings.
Plant Biotechnology 35, 141-154. doi:10.5511/plantbiotechnology.18.0427a
利用機器：植物栽培室
 

環境光生物学研究部門（皆川研）

 
Kosuge, K., Tokutsu, R., Kim, E., Akimoto, S., Yokono, M., Ueno, Y., Minagawa, J. (2018) LHCSR1-dependent fluorescence quenching is mediated by excitation energy transfer from LHCII to photosystem I in Chlamydomonas reinhardtii. Proc. Natl. Acad. Sci. U. S. A.,115: 3722-3727,
利用機器：クリーンベンチ
 
Kim, E., Tokutsu, R, Minagawa, J. (2018)  Investigation on the thermodynamic dissociation kinetics of photosystem II supercomplexes to determine the binding strengths of light-harvesting complex. J. Phys. Chem. B, 122: 1627-1630, 2018.
利用機器：クリーンベンチ
 

オルガネラ制御研究室（真野研）

 
Kanai, M., Mano, S., and Nishimura, M. (2017). An efficient method for the isolation of highly purified RNA from seeds for use in quantitative transcriptome analysis. J. Vis. Exp. 119, e55008.
利用機器：植物栽培室、インキュベーター
 
Hayashi, M., Tanaka, M. Yamamoto, S., Nakagawa, T., Kanai, M., Anegawa, A., Ohnishi, M., Mimura, T., and Nishimura, M. (2017). Plastidial folate prevents starch biosynthesis triggered by sugar influx into non-photosynthetic plastids of Arabidopsis. Plant Cell Physiol. 58, 1328-1338.
利用機器：植物栽培室、インキュベーター
 

細胞動態研究部門（上田研）

 
Minamino, N., Kanazawa, T., Nishihama, R., Yamato, T.K., Ishizaki, K., Kohchi, T., Nakano, A., and Ueda, T. (2017). Dynamic reorganization of the endomembrane system during spermatogenesis in Marchantia polymorpha. J. Plant Res. 130, 433-441.
利用機器：植物栽培室
 
Minamino N, Kanazawa T, Era A, Ebine K, Nakano A, Ueda T. (2018). RAB GTPases in the Basal Land Plant Marchantia polymorpha. Plant Cell Physiol. 59, 845-856.
 利用機器：植物栽培室
 
Takemoto K, Ebine K, Askani JC, Krüger F, Gonzalez ZA, Ito E, Goh T, Schumacher K, Nakano A, Ueda T. (2018). Distinct sets of tethering complexes, SNARE complexes, and Rab GTPases mediate membrane fusion at the vacuole in Arabidopsis. Proc Natl Acad Sci U S A. 6;115(10):E2457-E2466.
 利用機器：植物栽培室
 

共生システム研究部門（川口研）

 
Yano, K., Aoki, S., Liu, M., Umehara, Y., Suganuma, N.,  Iwasaki, W., Sato, S., Soyano, T., Kouchi, H., and  Kawaguchi,  M. (2017). Function and evolution of a Lotus japonicus AP2/ERF family transcription factor that is required for development of infection threads.  DNA Res. 24, 193-203.
利用機器：植物栽培室
 

光学解析室（亀井研）

 
Tominaga, J., Nakahara, Y., Horikawa, D., Tanaka, A., Kondo, M., Kamei, Y., Takami, T., Sakamoto, W., Unno, K., Sakamoto, A. and Shimada, H. (2018). Overexpression of the protein disulfide isomerase AtCYO1 in chloroplasts slows darkinduced senescence in Arabidopsis. Plant Biol. 18, 80
利用機器：インキュベーター
 
Shimmura, T., Nakayama, T., Shinomiya, A., Fukamachi, S., Yasugi, M., Watanabe, E., Shimo, T., Senga, T., Nishimura, T., Tanaka, M., Kamei, Y., Naruse, K., and Yoshimura, T. (2017). Dynamic plasticity in phototransduction regulates seasonal changes in color perception. Nat. Commun. 8, 412.
利用機器：ハイパースペクトルカメラ
 
Homma, N., Harada, Y., Uchikawa, T., Kamei, Y., and Fukamachi, S. (2017). Protanopia (red color-blindness) in medaka: a simple system for producing color-blind fish and testing their spectral sensitivity. BMC Genetics 18, 10.
利用機器：ハイパースペクトルカメラ、ひだまりmini
 

環境光生物学研究部門（皆川研）

 
Kim, E, Akimoto, E, Tokutsu, R., Yokono, M., Minagawa, J. (2017). Fluorescence lifetime analyses reveal how the high light-responsive protein LHCSR3 transforms PSII light-harvesting complexes into an energy-dissipative state. J. Biol. Chem. 292, 18951-18960.
利用機器：クリーンベンチ
 

環境光生物学研究部門（皆川研）

 
Aihara, Y., Takahashi, S., and Minagawa, J. Heat induction of cyclic electron flow around photosystem I in the symbiotic dinoflagellate Symbiodinium. (2016). Plant Physiol. 171, 522-529.
利用機器：インキュベーター
 

光学解析室

 
Yokoyama, R., Yamamoto, H., Kondo, M., Takeda, S., Ifuku, K., Fukao, Y., Kamei, Y., Nishimura, M. and Shikanai, T. (2016). Grana-localized proteins, RIQ1 and RIQ2, affect the organization of light-harvesting complex II and grana. Plant Cell 28, 2261–2275. 
利用機器：植物栽培室
 
Suthaparan, A., Solhaug, K. A., Stensvand, A. and Gislerød, H. R. (2016). Determination of UV action spectra affecting the infection process of Oidium neolycopersici, the cause of tomato powdery mildew. Journal of Photochemistry and Photobiology B: Biology 156, 41–49.
利用機器：植物栽培室
 
Homma, N., Harada, Y., Uchikawa, T., Kamei, Y. and Fukamachi, S. (2017). Protanopia (red color-blindness) in medaka: a simple system for producing color-blind fish and testing their spectral sensitivity. Sci. Rep. 6, 39383
利用機器：ハイパースペクトルカメラ、その他（ひだまりmini）
 

進化発生研究部門（新美研）

 
Gotoh, H., Ishiguro, M., Nishikawa, H., Morita, S., Okada, K., Miyatake, T., Yaginuma T., and Niimi, T. (2016) Molecular cloning and functional characterization of the sex-determination gene doublesex in the sexually dimorphic broad-horned beetle Gnatocerus cornutus (Coleoptera, Tenebrionidae). Sci. Rep. 6, 29337.
利用機器：その他（設備・備品）
 

多様性生物学研究室（星野G）

 
Hoshino, A., Jayakumar, V., Nitasaka, E., Toyoda, A., Noguchi, H., Itoh, T., Shin-I, T., Minakuchi, Y., Koda, Y., Nagano, A., Yasugi, M., Honjo, M., Kudoh, H., Seki, M., Kamiya, A., Shiraki, T., Carninci, P., Asamizu, E., Nishide, H., Tanaka, S., Park, K.I., Morita, Y., Yokoyama, K., Uchiyama, I., Tanaka, Y., Tabata, S., Shinozaki, K., Hayashizaki, Y., Kohara, Y., Suzuki, Y., Sugano, S., Fujiyama, A., Iida, S., and Sakakibara, Y. (2016). Genome sequence and analysis of the Japanese morning glory Ipomoea nil. Nat. Commun. 7, 13295.
利用機器：インキュベーター、屋外温室・ファイトトロン、プロイディアナライザー
 
Azuma, M., Morimoto, R., Hirose, M., Morita, Y., Hoshino, A., Iida, S., Oshima, Y., Mitsuda, N., Ohme-Takagi, M., and Shiratake, K. (2016). A petal-specific InMYB1 promoter from Japanese morning glory: a useful tool for molecular breeding of floricultural crops. Plant Biotechnol. J. 14, 354-363.
利用機器：屋外温室・ファイトトロン
 
Hoshino, A., Yoneda, Y., and Kuboyama, T. (2016). A Stowaway transposon disrupts the InWDR1 gene controlling flower and seed coloration in a medicinal cultivar of the Japanese morning glory. Genes Genet. Syst. 91, 37-40.
利用機器：インキュベーター、屋外温室・ファイトトロン
 

共生システム研究部門（川口研）

 
Nagae, M., Parniske, M., Kawaguchi, M., and Takeda, N. (2016). The relationship between thiamine and two symbioses: root nodule symbiosis and arbuscular mycorrhiza. Plant Signal. Behav. 11, e1265723.
利用機器：植物栽培室, 屋外温室・ファイトトロン
 
Kikuchi, Y., Hijikata, N., Ohtomo, R., Handa, Y., Kawaguchi, M., Saito, K., Masuta, C., and Ezawa, T. (2016).  Aquaporin-mediated long-distance polyphosphate translocation directed towards the host in arbuscular mycorrhizal symbiosis: application of virus induced gene silencing. New Phytol. 211, 1202-1208.
利用機器：植物栽培室
 
Kameoka, H., Dun, E.A., Lopez-Obando, M., Brewer P.B., de Saint Germain, A., Rameau, C., Beveridge, C.A., and Kyozuka, J. (2016). Phloem transport of the receptor DWARF14 protein is required for full function of strigolactones. Plant Physiol. 172, 1844–1852.
利用機器：植物栽培室, 屋外温室・ファイトトロン
 
Nagae, M., Parniske, M., Kawaguchi, M., and Takeda, N. (2016). The thiamine biosynthesis gene THI1 promotes nodule growth and seed maturation. Plant Physiol. 172, 2033-2043.
利用機器：植物栽培室, 屋外温室・ファイトトロン
 
Yano, K., Aoki, S., Liu, M., Umehara, Y., Suganuma, N., Iwasaki, W., Sato, S., Soyano, T., Kouchi, H., and Kawaguchi, M. Function and evolution of a Lotus japonicus AP2/ERF family transcription factor that is required for development of infection threads. DNA Res. 2016 Dec 27.
利用機器：植物栽培室, 屋外温室・ファイトトロン
 
Tsuzuki, S., Handa, Y., Takeda, N., and Kawaguchi, M. (2016). Strigolactone-induced putative secreted protein 1 is required for theestablishment of symbiosis by the arbuscular mycorrhizal fungus Rhizophagusirregulars. Mol. Plant Microbe Interact. 29, 277-286.
利用機器：植物栽培室
 
Nishida, H., Handa, Y., Tanaka, S., Suzaki, T., and Kawaguchi, M. (2016). Expression of the CLE-RS3 gene suppresses root nodulation in Lotus japonicus. J Plant Res. 129, 909-919.
利用機器：植物栽培室
 

生物進化研究部門（長谷部研）

 
Plavskin, Y., Nagashima, A., Perroud, P.-F., Hasebe, M., Quatrano, R.S., Atwal, G.S., and Timmermans, M.C.P. (2016). Ancient trans-acting sirnas confer robustness and sensitivity onto the auxin response. Dev. Cell 36, 276-289.
利用機器：インキュベーター
 
Li, C., Sako, Y., Imai, A., Nishiyama, T., Thompson, K., Kubo, M., Hiwatashi, Y., Kabeya, Y., Karlson, D., Wu, S.-H., Ishikawa, M., Murata, T., Benfey, P. N., Sato, Y., Tamada, Y., Hasebe, M. (2017) A Lin28 homologue reprograms differentiated cells to stem cells in the moss Physcomitrella patens. Nat. Comm. 8, 14242.
利用機器：植物栽培室、インキュベーター、プレハブ恒温室
 

多様性生物学研究室（真野G）

 
Kanai, M., Mano, S., Kondo, M., Hayashi, M., and Nishimura, M. (2016). Extension of oil biosynthesis during the mid-phase of seed development enhances oil content in Arabidopsis seeds. Plant Biotechnol. J. 14, 1241-1250.
利用機器：植物栽培室
 
Watanabe, E., Mano, S., Nomoto, M., Tada, Y., Hara-Nishimura, I., Nishimura, M., and Yamada, K. (2016). HSP90 stabilizes auxin-responsive phenotypes by masking a mutation in the auxin receptor TIR1. Plant Cell Physiol. 57, 2245-2254.
利用機器：植物栽培室
 
Cui, S., Hayashi, Y., Otomo, M., Mano, S., Oikawa, K., Hayashi, M., and Nishimura, M. (2016). Sucrose production mediated by lipid metabolism suppresses physical interaction of peroxisomes and oil bodies during germination of Arabidopsis thaliana. J. Biol. Chem. 291, 19734-19745.
利用機器：植物栽培室
 
Kamigaki, A.*, Nito, K.*, Hikino, K., Goto-Yamada, S., Nishimura, M., Nakagawa, T., and Mano, S. (2016). Gateway vectors for simultaneous detection of multiple protein−protein interactions in plant cells using bimolecular fluorescence complementation. PLoS One 11, e0160717. *Co-first authors.
利用機器：植物栽培室
 
Kimori, Y., Hikino, K., Nishimura, M., and Mano, S. (2016). Quantifying morphological features of actin cytoskeletal filaments in plant cells based on mathematical morphology. J. Theor. Biol. 389, 123-131.
利用機器：植物栽培室
 
Kanai, M., Mano, S., and Nishimura, M. Efficient method for highly purified RNA isolation in seeds towards quantitative transcriptome analysis. J. Vis. Exp. 2016 Aug 24.
利用機器：植物栽培室
 

植物器官形成学（岡田清孝所長研究室）

 
Tatematsu, K., Toyokura, K., Miyashima, S., Nakajima, K., and Okada, K. (2015) A molecular mechanism that confines the activity pattern of miR165 in Arabidopsis leaf primordia. Plant J. 82, 596-608.
利用機器：植物栽培室 
 
Toyokura, K., Yamaguchi, K., Shigenobu, S., Fukaki, H., Tatematsu, K., and Okada, K. (2015) Mutations in plastidial 5-aminolevulinic acid biosynthesis genes suppress pleiotropic defect in shoot development of mitochondrial GABA shunt mutant in Arabidopsis. 56, 1229-1238.
利用機器：植物栽培室 、プレハブ恒温室
 

多様性生物学研究室（星野G）

 
Morita, Y., Ishiguro, K., Tanaka, Y., Iida, S., and Hoshino, A. (2015). Spontaneous mutations of the UDP-glucose: flavonoid 3-O-glucosyltransferase gene confers pale and dull colored flowers in the Japanese and common morning glories. Planta 242, 575-587.
利用機器：インキュベーター、屋外温室・ファイトトロン
 

生物進化研究部門（長谷部研）

 
Fukushima, K., Fujita, H., Yamaguchi, T., Kawaguchi, M., Tsukaya, H., and Hasebe, M. (2015). Oriented cell division shapes carnivorous pitcher leaves of Sarracenia purpurea. Nat. Commun. 6, 6450.
利用機器：インキュベーター、屋外温室・ファイトトロン
 
Otomo, K., Hibi, T., Murata, T., Watanabe, H., Kawakami, R., Nakayama, H., Hasebe, M., and Nemoto, T. (2015). Multi-point scanning two-photon excitation microscopy by utilizing a high-peak-power 1042-nm laser. Anal. Sci. 31, 307-313.
利用機器：インキュベーター
 

共生システム研究部門（川口研）

 
Takeda, N., Handa, Y., Tsuzuki, S., Kojima, M., Sakakibara, H., and Kawaguchi, M. (2015). Gibberellins interfere with symbiosis signaling and gene expression and alter colonization by arbuscular mycorrhizal fungi in Lotus japonicus. Plant Physiol. 167, 545-557.
利用機器：植物栽培室
 
Okamoto, S., Suzuki, T., Kawaguchi, M., Higashiyama, T., and Matsubayashi, Y. (2015). A comprehensive strategy for identifying long-distance mobile peptides in xylem sap. Plant J. 84, 611-620.
利用機器：植物栽培室
 
Handa, Y., Nishide, H., Takeda, N., Suzuki, Y., Kawaguchi, M., and Saito, K. (2015). RNA-seq transcriptional profiling of an arbuscular mycorrhiza provides insights into regulated and coordinated gene expression in Lotus japonicus and Rhizophagus irregularis. Plant Cell Physiol. 56, 1490-1511.
利用機器：植物栽培室
 

多様性生物学研究室（栂根G）

 
Hayashi-Tsugane, M., Maekawa M., and Tsugane, K. (2015). A gain-of-function Bushy dwarf tiller 1 mutation in rice microRNA gene miR156d caused by insertion of the DNA transposon nDart1. Sci. Rep. 5, 14357.
利用機器：植物栽培室、インキュベーター
 

多様性生物学研究室（真野G）

 
Oikawa, K., Matsunaga, S., Mano, S., Kondo, M., Yamada, K., Hayashi, M., Kagawa, T., Kadota, A., Sakamoto, W., Higashi, S., Watanabe, M., Mitsui, T., Shigemasa, A., Iino, T., Hosokawa, Y., and Nishimura, M. (2015). Physical interaction between peroxisomes and chloroplasts elucidated by in situ laser analysis. Nature Plants 1, 15035.
利用機器：植物栽培室
 

植物器官形成学（岡田清孝所長研究室）

 
Takeda,S., Iwasaki, A., Tatematsu, K., and Okada, K. (2014) The half-size ABCtransporter FOLDED PETALS 2/ABCG13 is involved in petal elongation throughnarrow spaces in Arabidopsis thaliana floral buds. Plants 3, 348-358.
利用機器：植物栽培室
 
Ikeuchi,M., Igarashi, H., Okada, K., and Tsukaya, H. (2014) Acropetal leafletinitiation of Eschscholzia californica isachieved by constant spacing of leaflets and differential growth of leaf.Planta 240, 125-135.
利用機器：インキュベーター
 

共生システム（川口研）

 
Sasaki, T., Suzaki, T., Soyano, T., Kojima, M., Sakakibara, H., and Kawaguchi, M. (2014). Shoot-derived cytokinins systemically regulate root nodulation. Nat. Commun. 5, 4983.
利用機器：植物栽培室
 
Suzaki, T., Ito, M., Yoro, E., Sato, S., Hirakawa, H. Takeda, N., and Kawaguchi, M. (2014). Endoreduplication- mediated initiation of symbiotic organ development in Lotus japonicus. Development 141, 2441-2445
利用機器：植物栽培室、インキュベーター
 
Yoro, E., Suzaki, T., Toyokura, K., Miyazawa, H., Fukaki, H., and Kawaguchi, M. (2014). A positive regulator of nodule organogenesis, NODULE INCEPTION, acts as a negative regulator of rhizobial infection in Lotus japonicus. Plant Physiol.165,747-758.
利用機器：植物栽培室
 
Takeda, N., Handa, Y., Tsuzuki, S., Kojima, M., Sakakibara, H., and Kawaguchi, M. Gibberellins interfere with symbiosis signaling and gene expression, and alter colonization by arbuscular mycorrhizal fungi in Lotus japonicus. Plant Physiol. 2014 Dec 19. pii: pp.114.247700.  
利用機器：植物栽培室
 

真野G

 
Goto-Yamada, S., Mano, S., Nakamori, C., Kondo, M., Yamawaki, R., Kato, A., and Nishimura, M. (2014). Chaperone and protease functions of LON protease 2 modulate the peroxisomal transition and degradation with autophagy. Plant Cell Physiol. 55, 482-496.
利用機器：植物栽培室、インキュベーター
 
Shibata, M., Oikawa, K., Mano, S., and Nishimura, M. (2014). Measurement of the number of peroxisomes. Bio-Protoc. 4, e1284.
利用機器：植物栽培室、インキュベーター
 

高次細胞機構（西村研）

 
Goto-Yamada, S., Mano, S., Nakamori, C., Kondo, M., Yamawaki, R., Kato, A., and Nishimura, M. (2014). Chaperone and protease functions of LON protease 2 modulate the peroxisomal transition and degradation with autophagy. Plant Cell Physiol. 55, 482-496.
利用機器：植物栽培室、インキュベーター
 
Shibata, M., Oikawa, K., Mano, S., and Nishimura, M. (2014). Measurement of the number of peroxisomes. Bio-Protoc. 4, e1284.
利用機器：植物栽培室、インキュベーター
 

星野G

 
Faraco M, Spelt C, Bliek M, Verweij W, Hoshino A, Espen L, Prinsi B, Jaarsma R, Tarhan E, de Boer AH, Di Sansebastiano G-P, Koes R, Quattrocchio FM (2014) Hyperacidification of vacuoles by the combined action of two different P-ATPases in the tonoplast determines flower color. Cell Rep. 6, 32-43.
利用機器：屋外温室・ファイトトロン
 
Morita Y, Takagi K, Fukuchi-Mizutani M, Ishiguro K, Tanaka Y, Nitasaka E, Nakayama M, Saito N, Kagami T, Hoshino A, Iida S (2014) A chalcone isomerase-like protein enhances flavonoid production and flower pigmentation. Plant J. 78, 294-304.
利用機器：屋外温室、・ファイトトロン、インキュベーター
 
Park KI, Hoshino A, Saito N, Tatsuzawa F (2014) Anthocyanins in the flowers of Ipomoea tricolor Cav. (Convolvulaceae). Biochem. Syst. Ecol. 54, 15-18.
利用機器：屋外温室・ファイトトロン、圃場
 

栂根G

 
Hayashi-Tsugane, M., Takahara, H., Ahmed, N., Himi, E., Takagi, K., Iida, S., Tsugane, K., and Maekawa, M. A mutable albino allele in rice reveals that formation of thylakoid membranes requires SNOW-WHITE LEAF1 gene. (2014) Plant Cell Physiol. 55, 3-15.
利用機器：植物栽培室、屋外温室・ファイトトロン、インキュベーター
 

高次細胞機構（西村研）

 
Cui, S., Fukao, Y., Mano, S., Yamada, K., Hayashi, H., and Nishimura, M. (2013). Proteomic analysis reveals that the Rab GTPase RabE1C is involved in the degradation of the peroxisomal protein receptor PEX7 (peroxin 7). J. Biol. Chem. 288, 6014-6023
利用機器：植物栽培室、インキュベーター
 
Kanai, M., Hayashi, M., Kondo, M., and Nishimura, M. (2013). The plastidic DEAD-box RNA helicase22, HS3, is essential for plastid function both in seed development and in seedling growth. Plant Cell Physiol. 54, 1431-1440.
利用機器：植物栽培室、インキュベーター
 
Shibata, M., Oikawa, K., Yoshimoto, K., Kondo, M., Mano, S., Yamada, K., Hayashi, M., Sakamoto, W., Ohsumi, Y., and Nishimura, M. (2013). Highly oxidized peroxisomes are selectively degraded via autophagy in Arabidopsis.
Plant Cell 25, 4967-4983. 

利用機器：植物栽培室、インキュベーター
 
Yamada, K., Nagano, A.J., Nishina, M., Hara-Nishimura, I., and Nishimura, M. (2013). Identification of two novel endoplasmic reticulum body-specific integral membrane proteins. Plant Physiol. 161, 108-120.

利用機器：植物栽培室、インキュベーター
 

植物器官形成学（岡田清孝所長研究室）

 
Miyashima, S., Honda, M., Hashimoto, K., Tatmeatsu, K., Hashimoto, T., Sato-Nara, K., Okada, K., and Nakajima, K. (2013). A comprehensive expression analysis of Arabidopsis MICRORNA165/6 gene family in embryogenesis revealed a conserved role in meristem specification and a non-cell-autonomous function. Plant Cell Physiol. 54, 375-384.

利用機器：植物栽培室
 
Takeda, S., Iwasaki, A., Matsumoto, N., Tatematsu, K., and Okada, K. (2013). Physical interaction between floral organs controls petal morphogenesis in Arabidopsis thaliana. Plant Physiol. 161, 1242-1250.

利用機器：植物栽培室、インキュベーター

 
Ikeuchi, M., Tatematsu, K., Yamaguchi, T., Okada, K., and Tsukaya, H. (2013). Precocious progression of tissue maturation instructs basipetal initiation of leaflets in Chelidonium majus subsp. asiaticum (Papaveraceae). Am. J. Bot. 100, 1116-1126.

利用機器：インキュベーター

 
Tameshige, T., Fujita, H., Watanabe, K., Toyokura, K., Kondo, M., Tatematsu, K., Matsumoto, N., Tsugeki, R., Kawaguchi, M., Nishimura, M., and Okada, K. (2013). Pattern dynamics in adaxial-abaxial specific gene expression are modulated by a plastid retrograde signal during Arabidopsis leaf development. PLoS Genetics 9, e1003655. 

利用機器：植物栽培室

 

共生システム（川口研）

 
Okamoto, S., Shinohara, H., Mori, T., Matsubayashi, Y., and Kawaguchi, M. (2013). Root-derived CLE glycopeptides control nodulation by direct binding to HAR1 receptor kinase. Nature Commun. 4, 2191.
利用機器：植物栽培室、プレハブ恒温室
 
Takahara, M., Magori, S., Soyano, T., Okamoto, S., Yoshida C., Yano, K., Sato, S., Tabata, S., Yamaguchi, K., Shigenobu, S., Takeda, N., Suzaki, T., and Kawaguchi, M. (2013). TOO MUCH LOVE, a novel kelch repeat-containing F-box protein, functions in the long-distance regulation of the legume-Rhizobium symmbiosis. Plant Cell Physiol. 54, 433-447.

利用機器：植物栽培室

 

高次細胞機構（西村研）

 
Hayashi, M., Nanba, C., Saito M., Kondo,M., Takeda, A.,　Watanabe, Y., and Nishimura, M. (2012).Loss of XRN4 function can trigger cosuppression in a sequence-dependent manner.Plant Cell Physiol. 53, 1310-1321.
 
Toyokura, K., Hayashi, M., Nishimura, M.,and Okada, K. (2012). Adaxial-abaxial patterning: A novel function of the GABAshunt. Plant Signal. Behav. 7, 705-707.
 
Cui, S., Fukao, Y., Mano, S., Yamada, K.,Hayashi, M. and Nishimura, M. Proteomic analysis reveals that the Rab GTPaseRabE1c is involved in the degradation of the peroxisomal protein receptorPEROXIN 7. J. Biol. Chem. 2013 Jan. 7.
 
Yamada, K., Nagano, A. J., Nishina, M.,Hara-Nishimura, I., and Nishimura, M. Identification of two novel endoplasmicreticulum body-specific integral membrane proteins. Plant Physiol. 2012 Nov.19.
 
Review article

 
Mano, S., Kimori, Y., Takeda, T., Miwa, T.,Nishikawa, S., Mimura, T., Nagatani, A., and Nishimura, M. (2012). Usingimage-based resources: Databases for plant organelle dynamics and applicationsbased　on image information. In Introduction toSequence and Genome Analysis. iConcept Press Ltd. ed. (Brisbane, iConcept PressLtd.), chapter 16, pp. 1-25.
 
Tanaka, Y., Kimura, T., Hikino, K., Goto,S., Nishimura, M., Mano, S., and Nakagawa, T. (2012). Gateway vectors for plantgenetic engineering: Overview of plant vectors, application for bimolecularfluorescence complementation (BiFC) and multigene construction. In GeneticEngineering – Basics, New Applications and Responsiblities. Barrera-Saldaña, H.A ed. (Rijeka, INTECH), pp. 35-58.
 

多様性生物学（栂根G）

 
Eun C.-H., Takagi, K., Park, K.I., Maekawa,M, Iida, S. Tsugane, K. (2012) Activation and Epigenetic Regulation of DNATransposon nDart1 in Rice. Plant Cell Physiol. 53, 857-868.
 
Review Article


Saze, H., Tsugane, K., Kanno, T. andNishimura, T. (2012) DNA methylation in plants: Relationship with small RNAsand histone modifications, and functions in transposon inactivation. Plant CellPhysiol. 53, 766-784.

 

生物進化（長谷部研）

 
Aoyama, T., Hiwatashi, Y., Shigyo, M.,Kofuji, R., Kubo, M., Ito, M., and Hasebe, M. (2012). AP2-type transcriptionfactors determine stem cell identity in the moss Physcomitrella patens.Development 139, 3120-3129.
 
Nishiyama, T., Miyawaki, K., Ohshima, M.,Thompson, K., Nagashima, A., Hasebe, M., and Kurata, T. (2012). Digital geneexpression profiling by 5'-end sequencing of cDNAs during reprogramming in themoss Physcomitrella patens. PLOS ONE 7, e36471.
 
Nishimura, T., Matano, N., Morishima, T.,Kakinuma, C., Hayashi, K.I., Komano, T., Kubo, M., Hasebe, M., Kasahara, H.,Kamiya, Y., and Koshiba, T. (2012). Identification of indole-3-acetic acidtransport inhibitors including compounds affecting cellular PIN trafficking bytwo chemical screening approaches using maize coleoptile systems. Plant CellPhysiol. 53, 1671-1682.
 
Suetsugu, N., Sato, Y., Tsuboi, H.,Kasahara, M., Imaizumi, T., Kagawa, T., Hiwatashi, Y., Hasebe, M., and Wada, M.(2012). The KAC family of kinesin-like proteins is essential for theassociation of chloroplasts with the plasma membrane in land plants. Plant CellPhysiol. 53, 1854-1865.
 
Zhao, N., Ferrer, J.L., Moon, H.S.,Kapteyn, J., Zhuang, X., Hasebe, M., Stewart, C.N., Jr., Gang, D.R., and Chen,F. (2012). A SABATH Methyltransferase from the moss Physcomitrella patenscatalyzes S-methylation of thiols and has a role in detoxification.Phytochemistry 81, 31-41.
 

植物器官形成学（所長研究室）

 
Nakata, M., Matsumoto, N., Tsugeki, R.,Rikirsch, E. Laux, T., and Okada, K. (2012) Roles of the middle domain-specificWUSCHEL-RELATED-HOMEOBOX genes inearly development of leaves in Arabidopsis. Plant Cell 24, 519-535.
 
Nakata, M. and Okada, K. (2012) Thethree-domain model: A new model for the early development of leaves inArabidopsis thaliana. Plant Signal. Behav. 7, 1423-1427.
 
Miyashima, S., Honda, M., Hashimoto, K.,Tatmeatsu, K., Hashimoto, T., Sato-Nara, K., Okada, K., and Nakajima, K. (2013)A comprehensive expression analysis of Arabidopsis MICRORNA165/6 gene family in embryogenesis revealed a conservedrole in meristem specification and a non-cell-autonomous function. Plant CellPhysiol. 54, 375-384.
 
Takeda, S., Iwasaki, A., Matsumoto, N.,Tatematsu, K., and Okada, K. (2013) Physical interaction between floral organscontrols petal morphogenesis in Arabidopsis thaliana. Plant Physiol. 161,1242-1250.
 
Ikeuchi, M., Tatematsu, K., Yamaguchi, T.,Okada, K., and Tsukaya, H. (2013) Precocious progression of tissue maturationinstructs basipetal initiation of leaflets inChelidonium majus subsp. asiaticum(Papaveraceae). Am. J. Bot. 100,1116-1126.
 
Tameshige, T., Fujita, H., Watanabe, K.,Toyokura, K., Kondo, M., Tatematsu, K., Matsumoto, N., Tsugeki, R., Kawaguchi,M., Nishimura, M., and Okada, K. (2013) Pattern dynamics in adaxial-abaxialspecific gene expression are modulated by a plastid retrograde signal duringArabidopsis leaf development. PLoS Genetics inpress.
 

高次細胞機構（西村研）

 
Goto, S., Mano, S., Nakamori C., and Nishimura, M. (2011). Arabidopsis ABERRANT PEROXISOME MORPHOLOGY 9 is a peroxin that recruits the PEX1-PEX6 complex to peroxisomes. Plant Cell 23, 1573-1587.
doi:  10.1105/tpc.110.080770
 
Mano, S., Nakamori, C., Fukao, Y., Araki, M., Matsuda, A., Konod, M., and Nishimura, M. (2011). A defect of peroxisomal membrane protein 38 causes enlargement of peroxisomes. Plant Cell Physiol. 52, 2157-2172.
doi:  10.1093/pcp/pcr147
 

植物器官形成学（所長研究室）

 
Toyokura, K., Watanabe, K., Oikawa, A., Kusano, M., Tameshige, T., Tatematsu, K., Matsumoto, N., Tsugeki, R., Saito, K., and Okada, K. (2011) Succinic semialdehyde dehydrogenase is involved in the robust patterning of Arabidopsis leaves along the adaxial-abaxial axis. Plant Cell Physiol. 52, 1340-1353.
doi:  10.1093/pcp/pcr079
 
Nakata M, Matsumoto N, Tsugeki R, Rikirsch E, Laux T, Okada K. (2012) Roles of the middle domain-specific WUSCHEL-RELATED HOMEOBOX genes in early development of leaves in Arabidopsis. Plant Cell. 24, 519-535.
doi:  10.1105/tpc.111.092858
 

生物進化（長谷部研）

 
Ishikawa, M., Murata, T., Sato, Y., Nishiyama, T., Hiwatashi, Y., Imai, A., Kimura, M., Sugimoto, N., Akita, A., Oguri, Y., Friedman, W.E., Hasebe, M., and Kubo, M. (2011). Physcomitrella cyclin-dependent kinase A links cell cycle reactivation to other cellular changes during reprogramming of leaf cells. Plant Cell 23, 2924-2938.
doi:  10.1105/tpc.111.088005
 

多様性生物学（星野G）

 
Saito, N., Tatsuzawa, F., Hoshino, A., Abe, Y., Ichimura, M., Yokoi, M., Toki, K., Morita, Y., Iida, S., and Honda T. (2011) The anthocyanin pigmentation controlled by the speckled and c-1 mutations of the Japanese morning glory. J. Japan. Soc. Hort. Sci. 80, 452-460.
doi:  10.2503/jjshs1.80.452
 
Park, K.I. and Hoshino, A. (2012) A WD40-repeat protein controls proanthocyanidin and phytomelanin pigmentation in the seedcoats of the Japanese morning glory. J. Plant Physiol. 169, 523-528.
doi:  10.1016/j.jplph.2011.12.001