研究業績

PUBLICATIONS 研究業績 2011 -> 2017

2017年

  • Fukushima, K., Fang, X., Alvarez-Ponce, D., Cai, H., Carretero-Paulet, L., Chen, C., Chang, T.-H., Farr, K.M., Fujita, T., Hiwatashi, Y., Hoshi, Y., Imai, T., Kasahara, M., Librado, P., Mao, L., Mori, H., Nishiyama, T., Nozawa, M., Pálfalvi, G., Pollard, S.T., Rozas, J., Sánchez-Gracia, A., Sankoff, D., Shibata, T.F., Shigenobu, S., Sumikawa, N., Uzawa, T., Xie, M., Zheng, C., Pollock, D.D., Albert, V.A., Li, S., and Hasebe, M. 2017.
    Genome of pitcher plant Cephalotus reveals genetic changes associated with carnivory. Nat. Ecol. Evol. 1: 0059, doi:10.1038/s41559-016-0059

  • Li, C., Sako, Y., Imai, A., Nishiyama, T., Thompson, K., Kubo, M., Hiwatashi, Y., Kabeya, Y., Karlson, D., Wu, S.-H., Ishikawa, M., Murata, M., Benfey, P.N., Sato, Y., Tamada, Y., and Hasebe, M. 2017
    A Lin28 homolog reprograms differentiated cells to stem cells in the moss Physcomitrella patens. Nat. Commun. 8, 14242. [PubMed]

2016年

  • Nagata, T., Hasebe, M., Toriba, T., Taneda, H. and Crane, P.R. 2016.
    Sex conversion in Ginkgo biloba (Ginkgoaceae). J. Jap. Bot. 91 Suppl.: 120-127. (pdf)
  • Tong, W., Imai, A., Tabata, R., Shigenobu, S., Yamaguchi, K., Yamada, M., Hasebe, M., Sawa, S., Motose, H., and Takahashi, T. 2016.
    Polyamine Resistance Is Increased by Mutations in a Nitrate Transporter Gene NRT1.3 (AtNPF6.4) in Arabidopsis thaliana. Front. Plant Sci. 7, 1–22. [PubMed]
  • Pereman, I., Mosquna, A., Katz, A., Wiedemann, G., Lang, D., Decker, E.L., Tamada, Y., Ishikawa, T., Nishiyama, T., Hasebe, M., et al. 2016.
    The Polycomb group protein CLF emerges as a specific tri-methylase of H3K27 regulating gene expression and development in Physcomitrella patens.
    Biochim. Biophys. Acta 1859, 860–870. [PubMed]
  • Plavskin, Y., Nagashima, A., Perroud, P.-F., Hasebe, M., Quatrano, R.S., Atwal, G.S., and Timmermans, M.C.P. 2016.
    Ancient trans-acting sirnas confer robustness and sensitivity onto the auxin response. Dev. Cell 36, 276-289. [PubMed]

2015年

  • Fukushima, K., Fujita, H., Yamaguchi, T., Kawaguchi, M., Tsukaya, H., and Hasebe, M. 2015.
    Oriented cell division shapes carnivorous pitcher leaves of Sarracenia purpurea.
    Nat. Commun.
    6, 6450. [PubMed]
  • Ishikawa, M. and Hasebe, M. 2015.
    Cell cycle reentry from the late S phase: implications from stem cell formation in the moss Physcomitrella patens.
    J. Plant Res. 128, 399-405. [PubMed].
  • Kinoshita, A., ten Hove, C.A., Tabata, R., Yamada, M., Shimizu, N., Ishida, T., Yamaguchi, K., Shigenobu, S., Takebayashi, Y., Iuchi, S., Kobayashi, M., Kurata, T., Wada, T., Seo, M., Hasebe, M., Blilou, I., Fukuda, H., Scheres, B., Heidstra, R., Kamiya, Y., and Sawa, S. 2015.
    A plant U-box protein, PUB4, regulates asymmetric cell division and cell proliferation in the root meristem.
    Development
    142, 444-453. [PubMed]
  • Shimizu, N., Ishida, T., Yamada, M., Shigenobu, S., Tabata, R., Kinoshita, A., Yamaguchi, K., Hasebe, M., Mitsumasu, K., and Sawa, S. 2015.
    BAM 1 and RECEPTOR-LIKE PROTEIN KINASE 2 constitute a signaling pathway and modulate CLE peptide-triggered growth inhibition in Arabidopsis root.
    New Phytol. in press. [PubMed]
  • Teh, O.K., Hatsugai, N., Tamura, K., Fuji, K., Tabata, R., Yamaguchi, K., Shigenobu, S., Yamada, M., Hasebe, M., Sawa, S., Shimada, T., and Hara-Nishimura, I. 2015.
    BEACH-domain proteins act together in a cascade to mediate vacuolar protein trafficking and disease resistance in Arabidopsis.
    Mol. Plant
    8, 389-398. [PubMed]
  • Otomo, K., Hibi, T., Murata, T., Watanabe, H., Kawakami, R., Nakayama, H., Hasebe, M., and Nemoto, T. 2015.
    Multi-point scanning two-photon excitation microscopy by utilizing a high-peak-power 1042-nm laser.
    Anal. Sci.
    31, 307-313. [PubMed]

2014年

  • Furuta, Y., Namba-Fukuyo, H., Shibata, T.F., Nishiyama, T., Shigenobu, S., Suzuki, Y., Sugano, S., Hasebe, M., and Kobayashi, I. 2014.
    Methylome diversification through changes in DNA methyltransferase sequence specificity. PLoS Genet. 10, e1004272. [PubMed].
  • Gusev, O., Suetsugu, Y., Cornette, R., Kawashima, T., Logacheva, M.D., Kondrashov, A.S., Penin, A.A., Hatanaka, R., Kikuta, S., Shimura, S., Kanamori, H., Katayose, Y., Matsumoto, T., Shagimardanova, E., Alexeev, D., Govorun, V., Wisecaver, J., Mikheyev, A., Koyanagi, R., Fujie, M., Nishiyama, T., Shigenobu, S., Shibata, T.F., Golygina, V., Hasebe, M., Okuda, T., Satoh, N., and Kikawada, T. 2014.
    Comparative genome sequencing reveals genomic signature of extreme desiccation tolerance in the anhydrobiotic midge. Nat. Commun. 5, 4784. [PubMed].
  • Hieno, A., Naznin, H.A., Hyakumachi, M., Sakurai, T., Tokizawa, M., Koyama, H., Sato, N., Nishiyama, T., Hasebe, M., Zimmer, A.D., Lang, D., Reski, R., Rensing, S.A., Obokata, J., and Yamamoto, Y.Y. 2014.
    ppdb: plant promoter database version 3.0. Nucleic Acids Res. 42, D1188-1192. [PubMed].
  • Ishida, T., Tabata, R., Yamada, M., Aida, M., Mitsumasu, K., Fujiwara, M., Yamaguchi, K., Shigenobu, S., Higuchi, M., Tsuji, H., Shimamoto, K., Hasebe, M., Fukuda, H., and Sawa, S. 2014.
    Heterotrimeric G proteins control stem cell proliferation through CLAVATA signaling in Arabidopsis. EMBO Rep. 15, 1202-1209. [PubMed].
  • Kishi-Kaboshi, M., Muto, H., Takeda, A., Murata, T., Hasebe, M., and Watanabe, Y. 2014.
    Localization of tobacco germin-like protein 1 in leaf intercellular space. Plant Physiol. Biochem. 85C, 1-8. [PubMed].
  • Mano, H., Fujii, T., Sumikawa, N., Hiwatashi, Y., and Hasebe, M. 2014.
    Development of an agrobacterium-mediated stable transformation method for the sensitive plant Mimosa pudica. PLoS One 9, e8 [PubMed].
  • Sakakibara, K., Reisewitz, P., Aoyama, T., Friedrich, T., Ando, S., Sato, Y., Tamada, Y., Nishiyama, T., Hiwatashi, Y., Kurata, T., Ishikawa, M., Deguchi, H., Rensing, S.A., Werr, W., Murata, T., Hasebe, M., and Laux, T. 2014.
    WOX13-like genes are required for reprogramming of leaf and protoplast cells into stem cells in the moss Physcomitrella patens. Development 141, 1660-1670. [PubMed].
  • Sessa, E., Banks, J., Barker, M., Der, J., Duffy, A., Graham, S., Hasebe, M., Langdale, J., Li, F., Marchant, D.B., Pryer, K.M., Rothfels, C.J., Roux, S.J,, Salmi, M.L., Sigel, E.M., Soltis, D.E., Soltis P.S., Stevenson DW, Wolf PG. 2014.
    Between two fern genomes. Gigascience 3, 15. [PubMed].
  • Takeshita, K., Shibata, T.F., Nikoh, N., Nishiyama, T., Hasebe, M., Fukatsu, T., Shigenobu, S., and Kikuchi, Y. 2014.
    Whole-genome sequence of Burkholderia sp. strain RPE67, a bacterial gut symbiont of the bean bug Riptortus pedestris. Genome Announc. e00556-14. [PubMed].
  • Tamada, Y., Murata, T., Hattori, M., Oya, S., Hayano, Y., Kamei, Y., and Hasebe, M. 2014.
    Optical property analyses of plant cells for adaptive optics microscopy.
    Int. J. Optomechatronics 8, 1-11. (pdf).
  • Tomescu, A.M., Wyatt, S.E., Hasebe, M., and Rothwell, G.W. 2014.
    Early evolution of the vascular plant body plan - the missing mechanisms.
    Curr. Opin. Plant Biol. 17C, 126-136. [PubMed].
  • Xu, B., Ohtani, M., Yamaguchi, M., Toyooka, K., Wakazaki, M., Sato, M., Kubo, M., Nakano, Y., Sano, R., Hiwatashi, Y., Murata, T., Kurata, T., Yoneda, A., Kato, K., Hasebe, M., and Demura T. 2014.
    Contribution of NAC transcription factors to plant adaptation to land.
    Science
    343, 1505-1508. [PubMed].
  • Yoshida, K., Makino, T., Yamaguchi, K., Shigenobu, S., Hasebe, M., Kawata, M., Kume, M., Mori, S., Peichel, C.L., Toyoda, A., Fujiyama, A., and Kitano, J. 2014.
    Sex chromosome turnover contributes to genomic divergence between incipient stickleback species. PLoS Genet. 10, e1004223. [PubMed].

2013年

  • Kim, S.Y., Colpitts, C.C., Wiedemann, G., Jepson, C., Rahimi, M., Rothwell, J.R., McInnes, A.D., Hasebe, M., Reski, R., Sterenberg, B.T., Suh, D.Y. 2013.
    Physcomitrella PpORS, basal to plant type III polyketide synthases in phylogenetic trees, is a very long chain 2'-oxoalkylresorcinol synthase.
    J. Biol. Chem. 288, 2767-2777. [PubMed].
  • Kubo, M., Imai, A., Nishiyama, T., Ishikawa, M., Sato, Y., Kurata, T., Hiwatashi, Y., Reski, R., and Hasebe, M. 2013.
    System for stable beta-estradiol-inducible gene expression in the moss Physcomitrella patens. PLoS ONE 8, e77356. [PubMed].
  • Shibata, T.F., Maeda, T., Nikoh, N., Yamaguchi, K., Oshima, K., Hattori, M., Nishiyama, T., Hasebe, M., Fukatsu, T., Kikuchi, Y., and Shigenobu, S. 2013.
    Complete Genome Sequence of Burkholderia sp. Strain RPE64, Bacterial Symbiont of the Bean Bug Riptortus pedestris. Genome Announc. 1, e00441-00413. [PubMed].
  • Zimmer, A.D., Lang, D., Buchta, K., Rombauts, S., Nishiyama, T., Hasebe, M., Van de Peer, Y., Rensing, S.A., and Reski, R. 2013.
    Reannotation and extended community resources for the genome of the non-seed plant Physcomitrella patens provide insights into the evolution of plant gene structures and functions. BMC Genomics 14, 498. [PubMed].
  • Murata, T., Sano, T., Sasabe, M., Nonaka, S., Higashiyama, T., Hasezawa, S., Machida, Y., and Hasebe, M. 2013.
    Mechanism of microtubule array expansion in the cytokinetic phragmoplast.
    Nat. Commun.
    [PubMed].
  • Sakakibara, K., Ando, S., Yip, H.K., Tamada, Y., Hiwatashi, Y., Murata, T., Deguchi, H., Hasebe, M., and Bowman, J.L. 2013.
    KNOX2 genes regulate the haploid-to-diploid morphological transition in land plants.
    Science. 339, 1067-1070. [PubMed]

2012年

  • Aoyama, T., Hiwatashi, Y., Shigyo, M., Kofuji, R., Kubo, M., Ito, M., and Hasebe, M. 2012.
    AP2-type transcription factors determine stem cell identity in the moss Physcomitrella patens. Development 139, 3120-3129. [PubMed]
  • Nishimura, T., Matano, N., Morishima, T., Kakinuma, C., Hayashi, K.I., Komano, T., Kubo, M., Hasebe, M., Kasahara, H., Kamiya, Y., and Koshiba, T. 2012.
    Identification of indole-3-acetic acid transport inhibitors including compounds affecting cellular PIN trafficking by two chemical screening approaches using maize coleoptile systems. Plant Cell Physiol. 53, 1671-1682. [PubMed]
  • Nishiyama, T., Miyawaki, K., Ohshima, M., Thompson, K., Nagashima, A., Hasebe, M., and Kurata, T. 2012.
    Digital gene expression profiling by 5'-end sequencing of cDNAs during reprogramming in the moss Physcomitrella patens. PLoS ONE 7, e36471. [PubMed]
  • Suetsugu, N., Sato, Y., Tsuboi, H., Kasahara, M., Imaizumi, T., Kagawa, T., Hiwatashi, Y., Hasebe, M., and Wada, M. 2012.
    The KAC family of kinesin-like proteins is essential for the association of chloroplasts with the plasma membrane in land plants. Plant Cell Physiol. 53, 1854-1865. [PubMed]
  • Zhao, N., Ferrer, J.L., Moon, H.S., Kapteyn, J., Zhuang, X., Hasebe, M., Stewart, C.N., Jr., Gang, D.R., and Chen, F. 2012.
    A SABATH methyltransferase from the moss Physcomitrella patens catalyzes S-methylation of thiols and has a role in detoxification. Phytochemistry 81, 31-41. [PubMed]

2011年

  • Aya, K., Hiwatashi, Y., Kojima, M., Sakakibara, H., Ueguchi-Tanaka, M., Hasebe, M., and Matsuoka, M. 2011.
    The Gibberellin perception system evolved to regulate a pre-existing GAMYB-mediated system during land plant evolution. Nat. Commun. 2, 544. [PubMed]
  • Banks, J.A., Nishiyama, T., Hasebe, M., Bowman, J.L., Gribskov, M., dePamphilis, C., Albert, V.A., Aono, N., Aoyama, T., Ambrose, B.A., Ashton, N.W., Axtell, M.J., Barker, E., Barker, M.S., Bennetzen, J.L., Bonawitz, N.D., Chapple, C., Cheng, C., Correa, L.G., Dacre, M., DeBarry, J., Dreyer, I., Elias, M., Engstrom, E.M., Estelle, M., Feng, L., Finet, C., Floyd, S.K., Frommer, W.B., Fujita, T., Gramzow, L., Gutensohn, M., Harholt, J., Hattori, M., Heyl, A., Hirai, T., Hiwatashi, Y., Ishikawa, M., Iwata, M., Karol, K.G., Koehler, B., Kolukisaoglu, U., Kubo, M., Kurata, T., Lalonde, S., Li, K., Li, Y., Litt, A., Lyons, E., Manning, G., Maruyama, T., Michael, T.P., Mikami, K., Miyazaki, S., Morinaga, S., Murata, T., Mueller-Roeber, B., Nelson, D.R., Obara, M., Oguri, Y., Olmstead, R.G., Onodera, N., Petersen, B.L., Pils, B., Prigge, M., Rensing, S.A., Riano-Pachon, D.M., Roberts, A.W., Sato, Y., Scheller, H.V., Schulz, B., Schulz, C., Shakirov, E.V., Shibagaki, N., Shinohara, N., Shippen, D.E., Sorensen, I., Sotooka, R., Sugimoto, N., Sugita, M., Sumikawa, N., Tanurdzic, M., Theissen, G., Ulvskov, P., Wakazuki, S., Weng, J.K., Willats, W.W., Wipf, D., Wolf, P.G., Yang, L., Zimmer, A.D., Zhu, Q., Mitros, T., Hellsten, U., Loque, D., Otillar, R., Salamov, A., Schmutz, J., Shapiro, H., Lindquist, E., Lucas, S., Rokhsar, D., and Grigoriev, I.V. 2011.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science 332, 960-963. [PubMed]
  • Ishikawa, M., Murata, T., Sato, Y., Nishiyama, T., Hiwatashi, Y., Imai, A., Kimura, M., Sugimoto, N., Akita, A., Oguri, Y., Friedman, W.E., Hasebe, M., and Kubo, M. 2011.
    Physcomitrella cyclin dependent kinase A links cell cycle reactivation to other cellular changes during reprogramming of leaf cells. Plant Cell 23, 2924-2938. [PubMed]
  • Motose, H., Hamada, T., Yoshimoto, K., Murata, T., Hasebe, M., Watanabe, Y., Hashimoto, T., Sakai, T., and Takahashi, T. 2011.
    NIMA-related kinases 6, 4, and 5 interact with each other to regulate microtubule organization during epidermal cell expansion in Arabidopsis thaliana. Plant J. 67, 993-1005. [PubMed]