2014年

論文リスト

14-1
Yoshida, K., Makino, T., Yamaguchi, K., Shigenobu, S., Hasebe, M., Kawata, M., Kume, M., Mori, S., Peichel, C.L., Toyoda, A., Fujiyama, A., and Kitano, J. (2014)
Sex chromosome turnover contributes to genomic divergence between incipient stickleback species.
PLoS Genet. 10, e1004223.
遺伝研 北野潤先生
次世代シーケンサー

14-2
Furuta, Y., Namba-Fukuyo, H., Shibata, F.T., Nishiyama, T., Shigenobu , S., Suzuki, Y., Sugano, S., Hasebe, M., Kobayashi, I. (2014)
Methylome diversification through changes in DNA methyltransferase sequence specificity.
PLoS Genet. 10, e1004272.
所外 東大 小林一三先生・生物進化
PacBio

14-3
Takeshita, K., Shibata, F.T., Nikoh, N., Nishiyama, T., Hasebe, M., Fukatsu, T., Shigenobu, S., Kikuchi, Y. (2014)
Whole-genome sequence of Burkholderia sp. strain RPE67, a bacterial gut symbiont of the bean bug Riptortus pedestris.
Genome Announc. 2, e00556-14.
所外 産総研・深津グループ
次世代シーケンサー

14-4
Satoh, M., Y. Tokaji, A. J. Nagano, I. Hara-Nishimura, M. Hayashi, M. Nishimura, H. Ohta and S. Masuda. (2014)
Arabidopsis mutants affecting oxylipin signaling in photo-oxidative stress responses.
Plant Physiol.
基生研 高次細胞機構
マイクロアレイ

14-5
Hira, R., Ohkubo, F., Masamizu, Y., Ohkura, M., Nakai, J., Okada, T., and Matsuzaki, M. (2014)
Reward-timing-dependent bidirectional modulation of cortical microcircuits during optical single neuron operant conditioning.
Nature Commun. 5, 5551.
基生研 光脳回路
シェーカー,ゲル撮影装置

14-6
Masamizu, Y., Tanaka, Y.R., Tanaka, Y.H., Hira, R., Ohkubo, F., Kitamura, K., Isomura, Y., Okada, T., and Matsuzaki, M. (2014)
Two distinct layer-specific dynamics of cortical ensembles during learning of a motor task.
Nature Neurosci. 17, 987-994.
基生研 光脳回路
シェーカー,ゲル撮影装置

14-7
Sasaki, T., Suzaki, T., Soyano, T., Kojima, M., Sakakibara, H., and Kawaguchi, M. (2014)
Shoot-derived cytokinins systemically regulate root nodulation.
Nat. Commun. 5, 4983.
基生研 共生システム
DNAシークエンサー

14-8
Suzaki, T., Ito, M., Yoro, E., Sato, S., Hirakawa, H. Takeda, N., and Kawaguchi, M. (2014)
Endoreduplication- mediated initiation of symbiotic organ development in Lotus japonicus.
Development 141, 2441-2445.
基生研 共生システム
DNAシークエンサー

14-9
Yoro, E., Suzaki, T., Toyokura, K., Miyazawa, H., Fukaki, H., and Kawaguchi, M. (2014)
A positive regulator of nodule organogenesis, NODULE INCEPTION, acts as a negative regulator of rhizobial infection in Lotus japonicus.
Plant Physiol.165,747-758.
基生研 共生システム
DNAシークエンサー

14-10
Kikuchi, Y., Hijikata, N., Yokoyama, K., Ohtomo, R., Handa, Y., Kawaguchi, M., Saito, K., and Ezawa, T. (2014)
Polyphosphate accumulation is driven by transcriptome alterations that lead to near-synchronous and near-equivalent uptake of inorganic cations in an arbuscular mycorrhizal fungus.
New Phytol. 204, 638-649.
基生研 共生システム
次世代シークエンサー

14-11
Takeda, N., Handa, Y., Tsuzuki, S., Kojima, M., Sakakibara, H., and Kawaguchi, M. (2014)
Gibberellins interfere with symbiosis signaling and gene expression, and alter colonization by arbuscular mycorrhizal fungi in Lotus japonicus.
Plant Physiol. pii: pp.114.247700.
基生研 共生システム
次世代シークエンサー、バイオアナライザー、DNAシークエンサー 、DNA抽出機

14-12
Hayashi-Tsugane, M., Takahara, H., Ahmed, N., Himi, E., Takagi, K., Iida, S., Tsugane, K., and Maekawa, M. (2014)
A mutable albino allele in rice reveals that formation of thylakoid membranes requires SNOW-WHITE LEAF1 gene.
Plant Cell Physiol. 55, 3-15.
基生研 多様性生物学
DNAシークエンサー、パーティクルガン、プラスミド自動分離装置

14-13
Morita Y, Takagi K, Fukuchi-Mizutani M, Ishiguro K, Tanaka Y, Nitasaka E, Nakayama M, Saito N, Kagami T, Hoshino A, Iida S. (2014)
A chalcone isomerase-like protein enhances flavonoid production and flower pigmentation. Plant J. 78, 294-304.
基生研 多様性生物学
DNAシークエンサー、プラスミド自動分離装置、DNA抽出機

14-14
Shirakawa, M., Ueda, H., Nagano, A.J., Shimada, T., Kohchi, T., Hara-Nishimura, I. (2014)
FAMA is an essential component for the differentiation of two distinct cell types, myrosin cells and guard cells, in Arabidopsis.
Plant Cell 26, 4039-4052.
基生研 多様性生物学
DNAマイクロアレイ

14-15
Maruyama, S., Tokutsu, R., and Minagawa, J. (2014)
Transcriptional regulation of the stress-responsive light harvesting complex genes in Chlamydomonas reinhardtii.
Plant Cell Physiol. 55, 1304-1310.
基生研 環境光生物学
リアルタイムPCR

14-16
Gusev, O., Suetsugu, Y., Cornette, R., Kawashima, T., Logacheva, M.D., Kondrashov, A.S., Penin, A.A., Hatanaka, R., Kikuta, S., Shimura, S., Kanamori, H., Katayose, Y., Matsumoto, T., Shagimardanova, E., Alexeev, D., Govorun, V., Wisecaver, J., Mikheyev, A., Koyanagi, R., Fujie, M., Nishiyama, T., Shigenobu, S., Shibata, T.F., Golygina, V., Hasebe, M., Okuda, T., Satoh, N., and Kikawada, T. (2014)
Comparative genome sequencing reveals genomic signature of extreme desiccation tolerance in the anhydrobiotic midge.
Nature Commun. 5, 4784.
基生研 生物機能情報分析室

14-17
Kaiwa, N., Hosokawa, T., Nikoh, N., Tanahashi, M., Moriyama, M., Meng, X.-Y., Maeda, T., Yamaguchi, K., Shigenobu, S., Ito, M., and Fukatsu, T. (2014)
Symbiont-supplemented maternal investment underpinning host’s ecological adaptation. Curr. Biol. 24, 2465-2470.
基生研 生物機能情報分析室
次世代シークエンサー

14-18
Kodama, Y., Suzuki, H., Dohra, H., Sugii, M., Kitazume, T., Yamaguchi, K., Shigenobu, S., and Fujishima, M. (2014)
Comparison of gene expression of Paramecium bursaria with and without Chlorella variabilis symbionts.
BMC Genomics 15, 183.
基生研 生物機能情報分析室
次世代シークエンサー

14-19
Bourguignon, T., Lo, N., Cameron, S.L., Sobotník, J., Hayashi, Y., Shigenobu, S., Watanabe, D., Roisin, Y., Miura, T., and Evans, T.A. (2014)
The evolutionary history of termites as inferred from 66 mitochondrial genomes.
Mol. Biol. Evol.
基生研 生物機能情報分析室

14-20
Ishida, T., Tabata, R., Yamada, M., Aida, M., Mitsumasu, K., Fujiwara, M., Yamaguchi, K., Shigenobu, S., Higuchi, M., Tsuji, H., Shimamoto, K., Hasebe, M., Fukuda, H., and Sawa, S. (2014)
Heterotrimeric G proteins control stem cell proliferation through CLAVATA signaling in Arabidopsis.
EMBO Rep. 5, 1202-1209.
基生研 生物機能情報分析室
次世代シークエンサー

14-21
Matsui, H., Takahashi, T., Murayama, S.Y., Uchiyama, I., Yamaguchi, K., Shigenobu, S., Matsumoto, T., Kawakubo, M., Horiuchi, K., Ota, H., Osaki, T., Kamiya, S., Smet, A., Flahou, B., Ducatelle, R., Haesebrouck, F., Takahashi, S., Nakamura, S., and Nakamura, M. (2014)
Development of new PCR primers by comparative genomics for the detection of Helicobacter suis in gastric biopsy specimens.
Helicobacter 19, 260-271.
基生研 生物機能情報分析室
次世代シークエンサー

14-22
Nishimura, T., Herpin, A., Kimura, T., Hara, I., Kawasaki, T., Nakamura, S., Yamamoto, Y., Saito, T.L., Yoshimura, J., Morishita, S., Tsukahara, T., Kobayashi, S., Naruse, K., Shigenobu, S., Sakai, N., Schartl, M., and Tanaka, M. (2014)
Analysis of a novel gene, Sdgc, reveals sex chromosome-dependent differences of medaka germ cells prior to gonad formation.
Development 141, 3363-3369.
基生研 生物機能情報分析室

14-23
Uehara, M., Wang, S., Kamiya, T., Shigenobu, S., Yamaguchi, K., Fujiwara, T., Naito, S., and Takano, J. (2014)
Identification and characterization of an arabidopsis mutant with altered localization of NIP5;1, a plasma membrane boric acid channel, reveals the requirement for D-galactose in endomembrane organization.
Plant Cell Physiol. 55, 704-714
基生研 生物機能情報分析室
次世代シークエンサー

14-24
Yasuta, N., Arakawa, K., Kawai, Y., Chujo, T., Nakamura, K., Suzuki, H., Ito, Y., Nishimura, J., Makino, Y., Shigenobu, S., et al. (2014)
Genetic and biochemical evidence for gassericin T production from Lactobacillus gasseri LA158 TI .
Milk Science 63, 9–17.
基生研 生物機能情報分析室
質量分析

14-25
Blankenburg, S., Balfanz, S., Hayashi, Y., Shigenobu, S., Miura, T., Baumann, O., Baumann, A., Blenau, W. (2014)
Cockroach GABAB receptor subtypes: Molecular characterization, pharmacological properties and tissue distribution.
Neuropharmacology
基生研 生物機能情報分析室
次世代シークエンサー

14-26
Torii T, Yoshimura T, Narumi M, Hitoshi S, Takaki Y, Tsuji S, Ikenaka K. (2014)
Determination of major sialylated N-glycans and identification of branched sialylated N-glycans that dynamically change their content during development in the mouse cerebral cortex.
Glycoconj J., 31, 671-683.
生理研 分子神経生理
質量分析、HPLC

14-27
Ishino Y, Hayashi Y, Naruse M, Tomita K, Sanbo M, Fuchigami T, Fujiki R, Hirose K, Toyooka Y, Fujimori T, Ikenaka K, Hitoshi S. (2014)
Bre1a, a histone H2B ubiquitin ligase, regulates the cell cycle and differentiation of neural precursor cells.
J Neurosci., 34, 3067-3078.
生理研 分子神経生理
DNAシークエンサー、LAS3000

14-28
Toshika Ohkawa, Shin’Ichiro Satake, Norihiko Yokoi, Yu Miyazaki, X Tomohiko Ohshita,5 Gen Sobue,Hiroshi Takashima, Osamu Watanabe, Yuko Fukata, and Masaki Fukata. (2014)
Identification and Characterization of GABAA Receptor Autoantibodies in Autoimmune Encephalitis.
The Journal of Neuroscience, 34(24):8151– 8163・8151
生理研 生体膜
DNAシークエンサー

14-29
Okada T., Akita T., Sato-Numata K., Islam Md. R., Okada Y. (2014)
A Newly Cloned ClC-3 Isoform, ClC-3d, as well as ClC-3a Mediates Cd2+-Sensitive Outwardly Rectifying Anion Currents.
Cell Physiol Biochem. 33:539-556
生理研 細胞生理・国際連携研究室
DNAシークエンサー

14-30
Shiina N, Nakayama K. (2014)
RNA granule assembly and disassembly modulated by nuclear factor associated with dsRNA 2 and nuclear factor 45.
J Biol Chem. 25;289(30):21163-80.
基生研 椎名研
質量分析

14-31
Yasuta, N., Arakawa, K., Kawai, Y., Chujo, T., Nakamura, K., Suzuki,H., Ito, Y., Nishimura, J., Makino, Y., Shigenobu, S., et al. (2014)
Genetic and biochemical evidence for gassericin T production fromLactobacillus gasseri LA158 TI .
Milk Science 63, 9–17.
所外 東北大
プロテインシークエンサー

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