List of Publications
05-1
Baldessari, D., Shin, Y., Krebs, O., K nig, R., Koide, T., Vinayagam, A., Fenger, U., Mochii, M., Terasaka, C., Kitayama, A., Peiffer, D., Ueno, N., Eils, R., Cho, K, W. and Niehrs, C. (2005)
Global gene expression profiling and cluster analysis in Xenopus laevis.
Mech. Dev., 122, 441-475
NIBB 形態形成
Plasmid automatic separation instrumentation・Shaking incubator
05-2
Cho, K. H., Shindo, T., Kim, G. T., Nitasaka, E. and Tsukaya, H. (2005)
Characterization of a member of the AN subfamily, IAN, from Ipomoea nil.
Plant Cell Physiol., 46, 250-255
NIBB 植物発生遺伝学
顕微鏡画像処理システム
05-3
Chung, H, A., Hyodo-Miura, J., Nagamune, T. and Ueno, N. (2005)
FGF signal regulates gastrulation cell movements and morphology through its target NRH.
Dev, Biol., 282, 95-110
NIBB 形態形成
Plasmid automatic separation instrumentation・Shaking incubator
05-4
Fujita, S., Iseki, M., Yoshikawa, S., Makino, Y., Watanabe, M., Motomura, T., Kawai, H. and Murakami, A. (2005)
Identification and characterization of a fluorescent flagellar protein from the brown alga Scytosiphon lomentaria (Scytosiphonales, Phaeophyceae): a flavoprotein homologous to Old Yellow Enzyme.
Eur. J. Phycol., 40, 159-167
NIBB 光環境学
Amino-acid sequence analyzer
05-6
Hanada, T. and Ohsumi, Y. (2005)
Structure-function relationship of Atg12, a ubiquitin-like modifier essential for autophagy.
Autophagy, 1(2), 110-118
NIBB 分子細胞生物学
Plasmid automatic separation instrumentation・ DNA sequencer
05-7
Hayashida, A., Takechi, K., Sugiyama, M., Kubo, M., Itoh, R. D., Takio, S., Fujita, T., Hiwatashi, Y., Hasebe, M. and Takano, H. (2005)
Isolation of mutant lines with decreased numbers of chloroplasts per cell from a tagged mutant library of the moss Physcomitrella patens.
Plant Biol., 7, 300-306
NIBB 生物進化
DNA sequencer
05-8
Inagaki, S., Masuda, C., Akaishi, T., Nakajima, H., Yoshioka, S., Ohta, T., Pal, B. and Aono, S. (2005)
Spectroscopic and redox properties of a CooA homologue from Carboxydothermus hydrogenoformans.
J. Biol. Chem., 280, 3269-3274
Institute for Molecular Science 戦略的方法論研究領域
Amino-acid sequence analyzer
05-9
Ito, S., Murakami, A., Sato, K., Nishina, Y., Shiga, K., Takahashi, T., Higashi, S., Iseki, M. and Watanabe, M. (2005)
Photocycle features of heterologously expressed and assembled eukaryotic flavin-binding BLUF domains of photoactivated adenylyl cyclase (PAC), a blue-light receptor in Euglena gracilis.
Photochem. Photobiol. Sci.、 4, 762-769
NIBB 光環境学
557・850・Shaking incubator・310・PCR
05-10
Kabeya, Y., Kamada, Y., Baba, M., Takikawa, H., Sasaki, M. and Ohsumi, Y. (2005)
Atg17 functions in cooperation with Atg1 and Atg13 in yeast autophagy.
Mol. Biol. Cell, 16, 2544-2553
NIBB 分子細胞生物学
DNA sequencer・Plasmid automatic separation instrumentation
05-11
Kamada, Y., Fujioka, Y., Suzuki, N. N., Inagaki, F., Wullschleger, S., Loewith, R., Hall, M. N, and Ohsumi, Y. (2005)
Tor2 directly phosphorylates the AGC Kinase Ypk2 to regulate actin polarization.
Mol. Cell. Biol., 25(16) , 7239-7248
NIBB 分子細胞生物学
Peptide synthesis
05-12
Kawamata, T., Kamada, Y., Suzuki, K., Kuboshima, N., Akimatsu, H., Ota, S., Ohsumi, M. and Ohsumi, Y. (2005)
Characterization of a novel autophagy-specific gene, ATG29.
Biochem. Biophys. Res. Comm., 338, 1884-1889
NIBB 分子細胞生物学
DNA sequencer・Plasmid automatic separation instrumentation
05-13
Kim, G. T., Fujioka, S., Kozuka, T., Tax, F. E., Takatsuto, S., Yoshida, S. and Tsukaya, H. (2005)
CYP90C1 and CYP90D1 are involved in different steps in the brassinosteroid biosynthesis pathway in Arabidopsis thaliana.
Plant J., (in press)
NIBB 植物発生遺伝学
顕微鏡画像処理システム・Vacuum freeze dryer
05-14
Kita, M., Okumura, Y., Ohdachi, S., Oba, Y., Yoshikuni, M., Nakamura, Y., Kido, H. and Uemura, D.（2005）
Purification and characterization of blarinasin, a new tissue kallilrein-like protease from the short-tailed shrew Blarina brevicauda -comparative studies with blarina toxin.
386, 177-182
NIBB 生殖生物学
SMART System・MALDI-TOF
05-16
Kitazawa, D., Hatakeda, Y., Kamada, M., Fujii, N., Miyazawa, Y., Hoshino, A., Iida, S., Fukaki,H., Terao-Morita, M., Tasaka, M., Suge, H. and Takahashi, H. (2005)
Shoot circumnutation and winding movements require gravisensing cells.
Proc. Natl. Acad. Sci., 102( 51), 18742-18747
NIBB 分子遺伝学
Plasmid automatic separation instrumentation
05-17
Kobayashi,T. and Ganley. A. R. D. (2005)
Recombination regulation by transcription-induced cohesin dissociation in rDNA repeats.
Science, 309, 1581-1584
NIBB ゲノム動態
BAS2000
05-18
Komatsu, Y., Watakabe, A., Hashikawa, T., Tochitani, S. and Yamamori, T. (2005)
Retional-binding protein gene is highly expressed in higher-order association areas of the primate neocortex.
Cereb. Cortex, 15, 96-108
NIBB 脳生物学
Plasmid automatic separation instrumentation・ DNA sequencer・ BAS2000・ FMBio
05-19
Kozuka, T., Horiguchi, G., Kim, G. T., Ohgishi, M., Sakai, T. and Tsukaya, H. (2005)
The different growth responses of the Arabidopsis thaliana leaf blade and the petiole during shade avoidance are regulated by photoreceptors and sugar.
Plant Cell Physiol., 46, 213-223
NIBB 植物発生遺伝学
顕微鏡画像処理システム・Flow cytometry
05-20
Kuroyanagi, M., Yamada, K., Hatsugai, N., Kondo, M., Tazawa, M., Nishimura, M. and Hara-Nishimura, I. (2005)
VPE is essential for microtoxin-induced susceptible cell death in Arabidopsis thaliana.
J. Biol. Chem., 280, 32914-32920
NIBB 高次細胞機構
Peptide synthesis
05-21
Maehr, R., Hang, H. C., Mintern, J. D., Kim, Y-M., Cuvillier, A., Nishimura,M., Yamada, K., Shirahama-Noda, K., Hara-Nishimura, I. and Ploegh, H. L.(2005)
Asparagine endopeptidase is not essential for class II MHC antigen presentation but isrequired for processing of Cathepsin L in mice.
J. Immunol.,174, 7066-7074
NIBB 高次細胞機構
Peptide synthesis
05-22
Maizel, A., Busch, M. A., Tanahashi, T., Perkovic, J., Kato, M., Hasebe, M. and Weigel, D. (2005)
The floral regulator LEAFY evolves by substitutions in the DNA binding domain.
Science, 308, 260-263
NIBB 生物進化
DNA sequencer
05-23
Mio, K., Kubo,Y., Ogura,T., Yamamoto,T. and Sato, C. (2005)
Visualization of the trimeric P2X2 receptor with a crown-capped extracellular domain.
Biochemical and Biophysical Reserch Comm., 337, 998-1005
NIPS 神経機能素子
Ultracentrifuge
05-24
Morita, Y., Hoshino, A., Kikuchi, Y., Okuhara, H., Ono, E., Tanaka, Y., Fukui, Y., Saito, N., Nitasaka, E., Noguchi, H. and Iida, S. (2005)
Japanese morning glory dusky mutants displaying reddish-brown or purplish-gray flowers are deficient in a novel glycosylation enzyme for anthocyanin biosynthesis, UDP-glucose : anthocyanidin 3-O-glucoside-2”-O-glucosyltransferase, due to 4-bp insertions in the gene.
The Plant J., 42, 353-363
NIBB 分子遺伝学
Plasmid automatic separation instrumentation・ NA2000・ BAS2000
05-25
Murata, T., Sonobe, S., Baskin, T. I., Hyodo, S., Hasegawa, S., Nagata, T., Horio, T. and Hasabe, M. (2005)
Microtubule-dependent microtubule nucleation based on recruitment of γ-tubulin in higher plants.
Nature Cell Biology, 7(10)
NIBB 生物進化
顕微鏡画像処理システム・Ultracentrifuge
05-26
Nakaune, S., Yamada, K., Kondo, M., Kato, T., Tabata, S., Nishimura M. and Hara-Nishimura I. (2005)
A vacuolar processing enzyme, deltaVPE, is involved in seed coat formation at the early stage of seed development.
Plant Cell, 17, 876-887
NIBB 高次細胞機構
Peptide synthesis
05-27
Ohnishi, M., Fukada-Tanaka, S, Hoshino, A., Takada, J., Inagaki, Y. and Iida, S. (2004)
Characterization of a novel Na+/H+ antiporter gene InNHX2 and comparison of InNHX2 with InNHX1, which is responsible for blue flower coloration by increasing the vacuolar pH in the japanese morning glory.
Plant Cell Physiol., 46, 259-267
NIBB 分子遺伝学
Plasmid automatic separation instrumentation・NA2000・Particle gun・BAS2000
05-28
Onodera, J. and Ohsumi, Y. (2005)
Autophagy is required for maintenance of amino acid levels and protein synthesis under nitorogen starvation.
J. Biol. Chem., 280 (36), 31582-31586
NIBB 分子細胞生物学
Amino-acid analyzer
05-29
Sakamaki, K., Takagi, C., Yoshino, J., Yokota, H., Nakamura, S., Kominami, K., Hyodo, A., Takamune, K., Yuge, M. and Ueno, N. (2005)
Transgenic frogs expressing the highly fluorescent protein venus under the control of a strong mammalian promoter suitable for monitoring living cells.
Dev. Dyn., 233, 562-569
NIBB 形態形成
Plasmid automatic separation instrumentation・Shaking incubator
05-30
Sano, R., Ju rez, C. M., Hass, Barbara, Sakakibara, K., Ito, M., Banks, J. A. and Hasebe, M. (2005)
KNOX homeobox genes potentially have similar function in both diploid unicellular and multicellular meristems, but not in haploid meristems.
Evol. Develop., 7, 69-78
NIBB 生物進化
DNA sequencer・Plasmid automatic separation instrumentation・NA2000・Shaking incubator・BAS2000
05-31
Shima, Y., Zubair, M., Ishihara, S., Shinohara, Y., Oka, S., Kimura, S., Okamoto, S., Minokoshi, Y., Suita, S. and Morohashi, K. (2005)
Ventromedial hypothalamic nucleus-specific enhancer of Ad4BP/SF-1 gene.
Mol. Endocrinol., 19(11), 2821-2823
NIBB 性差生物学
Ultracentrifuge
05-32
Suetsugu, N., Kagawa, T. and Wada, M. (2005)
An auxilin-like J-domain protein, JAC1, regulates phototropin-mediated chloroplast movement in Arabidopsis.
Plant Physiol., 139, 151-162
NIBB 光情報
DNA sequencer・Plasmid automatic separation instrumentation
05-33
Suetsugu,N., Mittmann, F., Wagner,G., Hughes, J. and Wada, M. (2005)
A chimeric photoreseptor gene, NEOCHROME, has arisen twice during plant evolution.
Proc. Natl. Acad. Sci., 102(38), 13705-13709
NIBB 光情報
DNA sequencer・Plasmid automatic separation instrumentation
05-34
Takada, H., Hattori, D., Kitayama, A., Ueno, N. and Taira, M. (2005)
Identification of target genes for the Xenopus hes-related protein XHR1, a prepattern factor specifying the midbrain-hindbrain boundary.
Dev. Biol ., 283, 253-267
NIBB 形態形成
Plasmid automatic separation instrumentation・Shaking incubator
05-35
Takahata, T., Komatsu, Y., Watakabe, A., Hashikawa, T., Tochitani, S. and Yamamori, T. (2005)
Activity-dependent expression of occ1 in excitatory neurons is a characteristic feature of the primate visual cortex.
Cereb. Cortex, 2005; Sep 8; [Epub ahead of print]
NIBB 脳生物学
Plasmid automatic separation instrumentation・DNA sequencer
05-36
Tanabe, Y., Hasebe, M., Sekimoto, H., Nishiyama, T. Kitani, M., Henschel, K., M nster, T., Theissen, G., Nozaki, H. and Ito, M. (2005)
Characterization of MADS-box genes in charophycean green algae and its implication for the evolution of MADS-box genes.
PNAS, 102, 2436-2441
NIBB 生物進化
DNA sequencer・Plasmid automatic separation instrumentation・NA2000・Shaking incubator・BAS2000
05-37
Tanahashi, T., Sumikawa, N., Kato, M. and Hasebe, M. (2005)
Diversification of gene function: homologs of the floral regulator FLO/LFY control the first zygotic cell division in the moss physcomitrella patens.
Develop., 132, 1727-1736
NIBB 生物進化
DNA sequencer・Plasmid automatic separation instrumentation・NA2000・Shaking incubator・Confocal laser scanning microscopy・PCR・BAS2000
05-38
Thomas, D. P., Ohki, T., Ueno, T., Hara, I., Adachi, S., Makino, Y., Ueyama, N., Lu, Y. and Watanabe, Y. (2005)
Monooxygenation of an aromatic ring by F43W/H64D/V68I myoglobin mutant and hydrogen peroxide.Myoglobin mutants as a model for P450 hydroxylation chemistry.
J. Biol. Chem., 280, 12858-12866
NAGOYA UNIVERSITY
MALDI-TOF/MS・Amino-acid analyzer
05-39
Tsukaya, H. (2005)
Molecular variation of Spiranthes sinensis (Orchidaceae) in Japan, with special reference to systematic treatment of seasonally differentiated groups and a dwarf form, f. gracilis, from Yakushima Island.
J. Plant Res., 118, 13-18.
NIBB 植物発生遺伝学
DNA sequencer
05-40
Tsukaya, H., Iokawa, Y., Kondo, M. and Ohba, H. (2005)
Large-scale general collection of wild-plant DNA in Mustang, Nepal.
J. Plant Res., 118, 57-60
NIBB 植物発生遺伝学
DNA sequencer
05-41
Watanabe, T. and Horiuchi, T. (2005)
A novel gene amplification system in yeast based on double rolling-circle replication.
EMBO J., 24, 190-198
NIBB ゲノム動態
Plasmid automatic separation instrumentation
05-42
Yokoyama, J., Fukada, T. and Tsukaya, H. (2005)
Molecular identification of the mycorrhizal fungi of the epiparasitic plant Monotropastrum humile var, glaberrimum (Ericaceae).
J. Plant Res., 118, 53-56
NIBB 植物発生遺伝学
DNA sequencer
05-43
Yoshida, K., Kawachi, M., Mori, M., Maeshima, M., Kondo, M., Nishimura, M. and Kondo, T. (2005)
The involvement of tonoplast proton pumps and Na+(K+)/H+ exchangers in the change of petal color during flower-opening of morning glory, Ipomoea tricolor cv. Heavenly Blue.
Plant Cell Physiol., 46, 407-415
NIBB 高次細胞機構
MALDI-TOF/MS
05-44
Yoshikawa, S., Suzuki, T., Watanabe, M. and Iseki,M. (2005)
Kinetic analysis of the activation of photoactivated adenylyl cyclase (PAC), a blue-light receptor for photomovements of Euglena.
Photochem. Photobiol. Sci., 4, 727-731
NIBB 光環境学
Microplate photometer MTP-120・ Ultracentrifuge・850
05-45
Yoshioka, S., Kobayashi, K., Yoshimura, H., Uchida, T., Kitagawa, T. and Aono, S. (2005)
Biophysical properties of a c-type heme in chemotaxis signal transducer protein DcrA.
Biochemistry,44 (46), 15406-15413
Institute for Molecular Science 生物無機
Amino-acid sequence analyzer
05-46
Zhou, L. Y., Wang, D. S., Senthilkumaran, S., Yoshikuni, M., Shibata, Y., Kobayashi, T., Sudhakumari, C. C. and Nagahama, Y. (2005)
Cloning, expression and characterization of three types of 17β-hydroxysteroid dehydrogenases from the Nile tilapia, Oreochromis niloticus.
J. Mol. Endocrinol., (in press)
NIBB 生殖生物学
DNA sequencer・Plasmid automatic separation instrumentation
05-47
小林ミヨ, 林美里．(2005)
有用豆類の種実における可溶性糖質および遊離アミノ酸組成について
鹿児島女子短期大学「紀要」第40号別刷
鹿児島女子短大
Amino-acid analyzer