2008

List of Publications

08-1
Nakamura, S., Aoki, Y., Saito, D., Kuroki, Y., Fujiyama, A., Naruse, K. and Tanaka, M. (2008)
Sox9b/sox9a2-EGFP transgenic medaka reveals the morphological reorganization of the gonads and a common precursor of both the female and male supporting cells.
Mol. Reprod. Dep. 75, 472-476
NIBB 生殖遺伝学
Conforcal microscope

08-2
Tanaka, T., Hashikawa, T., Higo, N., Tochitani, S. and Yamaori, T. ( 2008)
Difference in sensory dependence of occ1/Follistatin-related protein expression between macaques and mice.
J. Chem. Neuroanat. 35, 146-157
NIPS 生体恒常機能発達機構
DNA sequencer

08-3
Nishimura, H., Ahmed, N., Tsugane, K., Iida, S. and Maekawa, M. (2008)
Distribution and mapping of an active autonomous aDart element responsible for mobilizing nonautonoomous nDart1 transposons in cultivated rice varieties.
Theor. Appl. Genet., 116, 395-405
NIBB 分子遺伝学
Plasmid automatic separation instrumentation・NA2000

08-4
Mio, K., Kubo, Y., Ogura, T., Yamamoto, T., Arisaka, F. and Sato, C. (2008)
The motor protein prestin is a bullet-shaped morecule with inner cavities.
J, Biol, Chem., 283, 1137-1145
NIPS 神経機能素子
Ultracentrifuge

08-5
Kawamata, T., Kamada, Y., Kabeya, Y., Sekito, T. and Ohsumi, Y. (2008)
Organization of the pre-autophagosomal structure responsible for autophagosome formation.
Mol. Biol. Cell, 19, 2039-2050
NIBB 分子細胞生物学
DNA sequencer・Plasmid automatic separation instrumentation

08-6
Obara, K., Noda, T., Niimi , K. and Ohsumi, Y. (2008)
Transport of phosphatidylinositol 3-phosphate into the vacuole via autophagic membranes in Saccharomyces cerevisiae.
Genes Cells, 13, 537-547
NIBB 分子細胞生物学
DNA sequencer・Plasmid automatic separation instrumentation

08-7
Endo, T., Tarusawa, E., Notomi, K., Kaneda, K., Hirabayashi, M., Shigemoto, R. and Isa, T. (2008)
Dendritic Ih ensures high-fidelity dendritic spike responses of motion sensitive neurons in rat superior colliculus.
J. Neurophysiol. 99, 2066-2076
NIPS 脳形態解析
Freeze dryer

08-8
Sano, H., Nagai, Y., Miyakawa , T., Shigemoto, R. and Yokoi, M. (2008)
Increasesd social interaction in mice deficient of the striatal medium spiny neuron-specific phosphodiesterase 10A2.
J. Neurochem. 105, 546-556
NIPS 脳形態解析
Freeze dryer

08-9
Arai, Y., Hayashi, M. and Nishimura, M. (2008)
Proteomic analysis of highly purified peroxisomes from etiolated soybean cotyledons.
Plant Cell Phsiol. 49(4), 526-539
NIBB 高次細胞機構
MALDI-TOF/MS

08-10
Nakashima, A., Maruki, Y., Imamura, Y., Kondo.,Takata, H., Matsuura, A., Lee, K. S., Kikkawa, U., Ohsumi, Y. Yonezawa, K. and Kamada, Y. (2008)
The yeast tor signaling pathway is involved in G2/M transition via polo-kinase.
PLos ONE, 3, e2223
NIBB 分子細胞生物学
Flow cytometry・Plasmid automatic separation instrumentation・DNA sequencer・Shaking incubator

08-11
Chow, J. P., Fujikawa, A., Shimizu, H. and Noda, M. (2008)
Plasmin-mediated processing of protein tyrosine phosphatase rceptor type Z in mouse brain.
Neurosci. Lett. 442, 208-212
NIBB 統合神経生物学
Amino-acid sequence analyzer

08-12
Chow, J, P., Fujikawa, A., Shimizu, H., Suzuki, R. and Noda, M.(2008)
Metalloproteinase-and γ-secretase-mediated cleavage of protein-tyrosine phosphatase receptor type Z.
J. Biol. Chem. 283, 45, 30879-30889
NIBB 統合神経生物学
Peptide synthesis・HPLC・MALDI-TOF/MS

08-13
Arai, Y., Hayashi, M. and Nishimura, M. (2008)
Proteomic identification and characterization of a novel peroxisomal adenine nucleotide transporter supplying ATP for fatty acid β-oxidation in soybean and arabidopsis.
The Plant Cell. 20, 3227-3240
NIBB 高次細胞機構
MALDI-TOF/MS

08-14
Watakabe, A., Komatsu, Y., Sadakane, O., Shimegi, S., Takahata, T., Higo, N., Tochitani, S., Hashikawa, T., Naito, T., Osaki, H., Sakamoto, H., Okamoto, M., Ishikawa, A., Hara, S., Akasaki, T., Sato, H. and Yamamori, T. (2008)
Enriched expression of serotonin 1B and 2A receptor genes in macaque visual cortex and their bidirectional modulatory effects on neuronal responses.
Cereb Cortex. in press
NIBB 脳生物学
DNA sequencer

08-15
Hirokawa, J., Watakabe, A., Ohsawa, S. and Yamamori, T. (2008)
Analysis of area-specific expression patterns of RORbeta, ER81 and Nurr1 mRNAs in rat neocortex by double in situ hybridization and cortical box method.
PLoS ONE, 9, e3266
NIBB 脳生物学
DNA sequencer

08-16
Takahata, T., Komatsu, Y., Watakabe, A., Hashikawa, T., Tochitani, S. and Yamamori, T. (2008)
Differential expression patterns of occ1-related genes in adult monkey visual cortex.
Cereb Cortex. in press
NIBB 脳生物学
DNA sequencer

08-17
Kawamura, A., Koshida, S. and Takada, S. (2008)
Activator-to-repressor conversion of T-Box transcription factors by the ripply family of groucho/TLE-associated mediators.
Mol. Cell BIol. 28, 3236-3244
NIBB 分子発生学
DNA sequencer・Plasmid automatic separation instrumentation

08-18
Sokabe, T., Tsujiuchi, S., Kadowaki, T. and Tominaga, M. (2008)
Drosophila painless is a Ca2+ -requiring channel activated by noxious heat.
J. Neurosci. 28, 9929-9938
NIPS 細胞生理
DNA sequencer

08-19
Aoki, Y., Nagao, I., Saito, D., Ebe, Y., Kinjo, M. and Tanaka, M. (2008)
Temporal and spatial localization of three germline-specific proteins in medaka.
DEV. DYN. 237, 800-807
NIBB 生殖遺伝学
Conforcal microscope

08-20
Nakamura, S., Saito, D. and Tanaka, M. (2008)
Generation of transgenic medaka using modified bacterial artificial chromosome.
Dev, Growth Differ. 50, 415-419
NIBB 生殖遺伝学
Conforcal microscope

08-21
Shindo, A., Yamamoto, T. S. and Ueno, N. (2008)
Coordination of cell polarity during Xenopus gastrulation.
PLoS ONE (3) 2
NIBB 形態形成
Plasmid automatic separation instrumentation

08-22
Inada, H., Kawabata, F., Ishimaru, Y., Fushiki, T., Matsunami, H. and Tominaga, M. (2008)
Off-response property of an acid-activated cation channel complex PKD1L3-PKD2L1.
EMBO Rep. 9, 690-697
NIPS 細胞生理
DNA sequencer

08-23
Fujita, F., Uchida, K., Moriyama, T., Shima A., Shibasaki, K., Inada, H., Sokabe, T. and Tominaga, M. (2008)
Intracellular alkalization causes pain sensation through activation of TRPA1 in mice. J. Clin.Inverst., 118, 4049-4057
J. Clin. Inverst., 118, 4049-4057
NIPS 細胞生理
DNA sequencer

08-24
Antal, M.,Fukazawa, Y., Eordogh, M., Muszil, D., Molnar, E., Itakura, M., Takahashi, M. and Shigemoto , R. (2008)
Numbers, densities, and colocalzation of AMPA-and NMDA-type glutamate receptors at individual synapses in the superficial spinal dorsal horn of rats.
Journal of Neuroscience. 28, 9692-9701
NIPS 脳形態解析
Freeze dryer

08-25
Shinohara, Y., Hirase, H., Watanabe, M., Itakura, M., Takahashi, M. and SHigemoto, R. (2008)
Left-right asymmetry of the hippocampal synapses with differential subunit allocation of glutamate receptors.
Proc. natl. Aca. Sci. USA, 105, 19498-19503
NIPS 脳形態解析
DNA sequencer

08-26
Numata, T. and Okada, Y. (2008)
Proton Conductivity through the human TRPM7 channel and its molecular determinants. J.Biol. Chem. 283, 15097-15103
J. Biol. Chem. 283, 15097-15103
NIPS 機能協関
DNA sequencer・顕微鏡画像処理システム

08-27
Numata, T. and Okada, Y. (2008)
Molecular determinants of sensitivity and conductivity of human TRPM to Mg2+ and Ca2+.
Channels, 2, 283-286
NIPS 機能協関
DNA sequencer

08-28
Abe, J., Hiwatashi, Y., Ito, M., Hasebe, M. and Sekimoto, H. (2008)
Expression of genes under the control of endogenous HSP70 and CAB promimoters in the closterium peracerosum-strigosum-littorale complex.
Plant, Cell, Physiol. 49, 625-632
NIBB 生物進化
DNA sequencer・Plasmid automatic separation instrumentation

08-29
Inouye, T., Odahara, M., Fujita, T., Hasebe, M. and Sekine, Y. (2008)
Expression and complementation analyses of a chloroplast-localized homolog of bacterial RecA in the moss physcomitrella patens.
Biosci. Biotechmol. Biochem., 72 (5), 1340-1347
NIBB 生物進化
DNA sequencer・Plasmid automatic separation instrumentation

08-30
Morinaga, S., Nagano, J. A., Miyazaki, S., Kubo, M., Deruma, T., Fukuda, H., Sakai, S. and Hasebe, M. (2008)
Ecogenomics of cleistogamous and chasmogamous flowering: genome-wide gene expression patterns from cross-species microarray analysis in Cardamine kokaiensis (Brassicaceae).
Journal of Ecology, 96, 1086-1097
NIBB 生物進化
DNA sequencer・Plasmid automatic separation instrumentation

08-31
Hoshi, Y., Shirakawa, J., Hasebe, M., Fukushima, K. and Kondo, K. (2008)
Tandem repeat rDNA sequences derived from parents were stably maintained in hexaploids of drosera spathulata complex (Droseraceae).
Cytologia 73, 3, 313-325
NIBB 生物進化
DNA sequencer・Plasmid automatic separation instrumentation

08-32
Dodo, T. Y., Saigusa, T., Chiba, H., Nishiyama, T., Hirowatari, T., Ishii, M., Yagi, T., Hasebe, M. and Mohri, H. (2008)
Molecular phylogeny of Japanese skippers ( Lepidoptera, Hesperiidae)based on mitochondorial ND5 and COI gene sequenses.
Trans. lepid. Sac. Japan, 59, 1, 29-41
NIBB 生物進化
DNA sequencer・Plasmid automatic separation instrumentation

08-33
Rensing, S. A., Lang, D., Zimmer, A., Terry, A., Salamov, A., Shapiro, H., Nishiyama, T., Perroud, P.-F., Lindquist, E., Kamisugi, Y., Tanahashi, T., Sakakibara, K., Fujita, T., Oishi, K., Shin-I, T., Kuroki, Y., Toyoda, A., Suzuki, Y, Hashimoto, S., Yamaguchi, K., Sugano, S., Kohara, Y., Fujiyama, A., Anterola, A., Aoki, S., Ashton, N., Barbazuk, W. B., Barker, E., Bennetzen, J., Blankenship, R., Cho, S. H., Dutcher, S. K., Estelle, M., Fawcett, J. A., Gundlach, H., Hanada, K., Hey, A., Hicks, K. A., Hughes, J., Lohr, M., Mayer, K., Melkozernov, A., Murata, T., Nelson, D., Pils, B., Prigge, M., Reiss, B., Renner, T., Rombauts, S., Rushton, P., Sanderfoot, A., Schween, G., Shiu, S.-H., Stueber, K., Theodoulou, F. L., Tu, H., de Peer, Y. V., Verrier, P. J., Waters, E., Wood, A., Yang, L., Cove, D., Cuming, A. C., Hasebe, M., Lucas, S., Mishler, B. D., Reski, R., Grigoriev, I. V., Quatrano, R. S., Boore, J. L. (2008)
The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
Science, 319, 64-69
NIBB 生物進化
DNA sequencer・Plasmid automatic separation instrumentation

08-34
Fujita, T., Sakaguchi, H., Hiwatashi, Y., Wagstaff, S. J., Ito, M., Deguchi, H., Sato, T. and Hasebe, M. (2008)
Convergent evolution of shoots in land plants: lack of auxin polar transport in moss shoots.
Evol. Dev. 10, 2, 176-186
NIBB 生物進化
DNA sequencer・Plasmid automatic separation instrumentation

08-35
Sakakibara, K., Nishiyama, T., Deguchi, H. and Hasebe, M. (2008)
Class 1 KNOX genes are not involved in shoot deveropment in the moss physcomitrella patens but do function in sporophyte development.
Evolution & Development, 10, 5, 555-566
NIBB 生物進化
DNA sequencer・Plasmid automatic separation instrumentation・共焦点顕微鏡・ESEM

08-36
Hiwatashi, Y., Obara, M., Sato, Y., Fujita, T., Murata, T. and Hasebe, M. (2008)
Kinesins are indispensable for interdigitaion of phragmoplast microtubules in the moss physcomitrella patens.
The Plant Cell, 20, 3094-3106
NIBB 生物進化
DNA sequencer・Plasmid automatic separation instrumentation・共焦点顕微鏡・ESEM

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