References 

<Linked to pubmed>


Publication list for probe info

1:
Watakabe A, Ichinohe N, Ohsawa S, Hashikawa T, Komatsu Y, Rockland KS, Yamamori T.

Related Articles, Links

Comparative analysis of layer-specific genes in Mammalian neocortex.
Cereb Cortex. 2007 Aug;17(8):1918-33. Epub 2006 Oct 25.
PMID: 17065549 [PubMed - in process]
2:
Watakabe A, Ohsawa S, Hashikawa T, Yamamori T.

Related Articles, Links

Binding and complementary expression patterns of semaphorin 3E and plexin D1 in the mature neocortices of mice and monkeys.
J Comp Neurol. 2006 Nov 10;499(2):258-73.
PMID: 16977617 [PubMed - indexed for MEDLINE]
3:
Takahata T, Komatsu Y, Watakabe A, Hashikawa T, Tochitani S, Yamamori T.

Related Articles, Links

Activity-dependent expression of occ1 in excitatory neurons is a characteristic feature of the primate visual cortex.
Cereb Cortex. 2006 Jul;16(7):929-40. Epub 2005 Sep 8.
PMID: 16151175 [PubMed - indexed for MEDLINE]
4:
Yamamori T, Rockland KS.

Related Articles, Links

Neocortical areas, layers, connections, and gene expression.
Neurosci Res. 2006 May;55(1):11-27. Epub 2006 Mar 20. Review. Erratum in: Neurosci Res. 2007 May;58(1):100.
PMID: 16546282 [PubMed - indexed for MEDLINE]
5:
Komine Y, Nakamura K, Katsuki M, Yamamori T.

Related Articles, Links

Novel transcription factor zfh-5 is negatively regulated by its own antisense RNA in mouse brain.
Mol Cell Neurosci. 2006 Feb;31(2):273-83. Epub 2005 Oct 28.
PMID: 16257534 [PubMed - indexed for MEDLINE]
6:
Watakabe A, Komatsu Y, Nawa H, Yamamori T.

Related Articles, Links

Gene expression profiling of primate neocortex: molecular neuroanatomy of cortical areas.
Genes Brain Behav. 2006;5 Suppl 1:38-43. Review.
PMID: 16417616 [PubMed - indexed for MEDLINE]
7:
Komatsu Y, Watakabe A, Hashikawa T, Tochitani S, Yamamori T.

Related Articles, Links

Retinol-binding protein gene is highly expressed in higher-order association areas of the primate neocortex.
Cereb Cortex. 2005 Jan;15(1):96-108. Epub 2004 Jun 24.
PMID: 15217901 [PubMed - indexed for MEDLINE]
8:
Ichinohe N, Watakabe A, Miyashita T, Yamamori T, Hashikawa T, Rockland KS.

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A voltage-gated potassium channel, Kv3.1b, is expressed by a subpopulation of large pyramidal neurons in layer 5 of the macaque monkey cortex.
Neuroscience. 2004;129(1):179-85.
PMID: 15489040 [PubMed - indexed for MEDLINE]
9:
Tochitani S, Hashikawa T, Yamamori T.

Related Articles, Links

Occ1 mRNA expression reveals a characteristic feature in the hippocampal CA2 field of adult macaques.
Neurosci Lett. 2003 Jul 31;346(1-2):105-8.
PMID: 12850559 [PubMed - indexed for MEDLINE]
10:
Tochitani S, Hashikawa T, Yamamori T.

Related Articles, Links

Expression of occ1 mRNA in the visual cortex during postnatal development in macaques.
Neurosci Lett. 2003 Feb 6;337(2):114-6.
PMID: 12527401 [PubMed - indexed for MEDLINE]
11:
Tochitani S, Liang F, Watakabe A, Hashikawa T, Yamamori T.

Related Articles, Links

The occ1 gene is preferentially expressed in the primary visual cortex in an activity-dependent manner: a pattern of gene expression related to the cytoarchitectonic area in adult macaque neocortex.
Eur J Neurosci. 2001 Jan;13(2):297-307.
PMID: 11168534 [PubMed - indexed for MEDLINE]
12
Takahata T, Hashikawa T, Higo N, Tochitani S, Yamamori T.

Related Articles, Links

Difference in sensory dependence of occ1/Follistatin-related protein expression between macaques and mice.
J Chem Neuroanat. 2007 Sep 16; [Epub ahead of print]
PMID: 17950574 [PubMed - as supplied by publisher]
13:
Nakamura K, Watakabe A, Hioki H, Fujiyama F, Tanaka Y, Yamamori T, Kaneko T.


Transiently increased colocalization of vesicular glutamate transporters 1 and 2 at single axon terminals during postnatal development of mouse neocortex: a quantitative analysis with correlation coefficient.
Eur J Neurosci. 2007 Dec;26(11):3054-67.
PMID: 18028110 [PubMed - indexed for MEDLINE]
14:
Lyckman AW, Horng S, Leamey CA, Tropea D, Watakabe A, Van Wart A, McCurry C, Yamamori T, Sur M.


Gene expression patterns in visual cortex during the critical period: synaptic stabilization and reversal by visual deprivation.
Proc Natl Acad Sci U S A. 2008 Jul 8;105(27):9409-14. Epub 2008 Jul 7.
PMID: 18606990 [PubMed - in process]
15:
Hirokawa J, Bosch M, Sakata S, Sakurai Y, Yamamori T.


Functional role of the secondary visual cortex in multisensory facilitation in rats.
Neuroscience. 2008 Jun 2;153(4):1402-17. Epub 2008 Jan 12.
PMID: 18440715 [PubMed - in process]
16:
Hirokawa J, Watakabe A, Ohsawa S,  Yamamori T.


Analysis of Area-Specific Expression Patterns of RORbeta, ER81 and Nurr1 mRNAs in Rat Neocortex by Double In Situ Hybridization and Cortical Box Method.
PLoS ONE. 2008 Sep 25;3(9):e3266.
PMID: 18815614 [PubMed - in process]
http://www.plosone.org/article/info:doi/10.1371/journal.pone.0003266
17:
Watakabe A, Komatsu Y, Sadakane O, Shimegi S, Takahata T, Higo N, Tochitani S, Hashikawa T, Naito T, Osaki H, Sakamoto H, Okamoto M, Ishikawa A, Hara SI, Akasaki T, Sato H, Yamamori T.

Enriched Expression of Serotonin 1B and 2A Receptor Genes in Macaque Visual Cortex and their Bidirectional Modulatory Effects on Neuronal Responses.
Cereb Cortex. 2008 Dec 4. [Epub ahead of print]
PMID: 19056862 [PubMed - as supplied by publisher]
18:

Takahata T, Komatsu Y, Watakabe A, Hashikawa T, Tochitani S, Yamamori T.


Differential Expression Patterns of occ1-Related Genes in Adult Monkey Visual Cortex.
Neuroscience. 2009 Jan 10. [Epub ahead of print]
PMID: 19174181 [PubMed - as supplied by publisher]
19:
Moroni RF, Inverardi F, Regondi MC, Watakabe A, Yamamori T, Spreafico R, Frassoni C.

Expression of layer-specific markers in the adult neocortex of BCNU-Treated rat, a model of cortical dysplasia.
Neuroscience. 2009 Jan 10. [Epub ahead of print]
PMID: 19174181 [PubMed - as supplied by publisher]
20: Takaji M, Komatsu Y, Watakabe A, Hashikawa T, Yamamori T.
Paraneoplastic Antigen-Like 5 Gene (PNMA5) Is Preferentially Expressed in the Association Areas in a Primate Specific Manner.
Cereb Cortex. 2009 Apr 14. [Epub ahead of print]
PMID: 19366867 [PubMed - as supplied by publisher]
21: Sasaki T, Komatsu Y, Watakabe A, Sawada K, Yamamori T.
Prefrontal-Enriched SLIT1 Expression in Old World Monkey Cortex Established during the Postnatal Development.
Cereb Cortex. 2010 Feb 1. [Epub ahead of print]
PMID: 20123755 [PubMed - as supplied by publisher]
22: Puig MV, Watakabe A, Ushimaru M, Yamamori T, Kawaguchi Y.
Serotonin modulates fast-spiking interneuron and synchronous activity in the rat prefrontal cortex through 5-HT1A and 5-HT2A receptors.
J Neurosci. 2010 Feb 10;30(6):2211-22.
PMID: 20147548 [PubMed - indexed for MEDLINE]
23: Takahata T, Hashikawa T, Tochitani S, Yamamori T.
Differential expression patterns of OCC1-related, extracellular matrix proteins in the lateral geniculate nucleus of macaque monkeys.
J Chem Neuroanat. 2010 May 10. [Epub ahead of print]
PMID: 20457249 [PubMed - as supplied by publisher]
24: Kinoshita M, Matsui R, Kato S, Hasegawa T, Kasahara H, Isa K, Watakabe A, Yamamori T, Nishimura Y, Alstermark B, Watanabe D, Kobayashi K, Isa T.
Genetic dissection of the circuit for hand dexterity in primates.
Nature. 2012 Jun 17. doi: 10.1038/nature11206. [Epub ahead of print]
PMID: 22722837 [PubMed - as supplied by publisher]
25: Watakabe A, Hirokawa J, Ichinohe N, Ohsawa S, Kaneko T, Rockland KS, Yamamori T.
Area-specific substratification of deep layer neurons in the rat cortex.
J Comp Neurol. 2012 Nov 1;520(16):3553-73. doi: 10.1002/cne.23160.


Other references


1:
Liang F, Hatanaka Y, Saito H, Yamamori T, Hashikawa T.

Related Articles, Links

Differential expression of gamma-aminobutyric acid type B receptor-1a and -1b mRNA variants in GABA and non-GABAergic neurons of the rat brain.
J Comp Neurol. 2000 Jan 24;416(4):475-95.
PMID: 10660879 [PubMed - indexed for MEDLINE]
2:
Schaeren-Wiemers N, Gerfin-Moser A.

Related Articles, Links

A single protocol to detect transcripts of various types and expression levels in neural tissue and cultured cells: in situ hybridization using digoxigenin-labelled cRNA probes.
Histochemistry. 1993 Dec;100(6):431-40.
PMID: 7512949 [PubMed - indexed for MEDLINE]
3:
Hopman AH, Ramaekers FC, Speel EJ.

Related Articles, Links

Rapid synthesis of biotin-, digoxigenin-, trinitrophenyl-, and fluorochrome-labeled tyramides and their application for In situ hybridization using CARD amplification.
J Histochem Cytochem. 1998 Jun;46(6):771-7.
PMID: 9603790 [PubMed - indexed for MEDLINE]

4:
Korbinian Brodmann  translated to English by Laurence J. Gary
Brodmann's: Localisation in the Cerebral Cortex : The Principles of Comparative Localisation in the cerebral Cortex Based on Cytoarchitectonics

Springer, ISBN-10: 0387269177
5:
Oliver W. Sacks
An Anthropologist on Mars: Seven Paradoxical Tales

Vintage books, ISBN-10: 0679756973
6:
Watakabe A, Komatsu Y, Ohsawa S, Yamamori T.
Fluorescent in situ hybridization technique for cell type identification and characterization in the central nervous system.
Methods. 2010 Jul 14. [Epub ahead of print]
PMID: 20637287


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